bonasio r - Search Results

Year	Number of Results
2001	2
2003	1
2005	3
2006	2
2007	1
2009	1
2010	4
2011	1
2012	5
2013	5
2014	9
2015	2
2016	2
2017	8
2018	4
2019	5
2020	5
2021	8
2022	4
2023	8
2024	3

1

Neuropeptides specify and reprogram division of labor in the leafcutter ant Atta cephalotes.

Gilbert MB, Glastad KM, Fioriti M, Sorek M, Gannon T, Xu D, Pino LK, Korotkov A, Biashad A, Baeza J, Lauman R, Filippova A, Kacsoh BZ, Bonasio R, Mathis MW, Garcia BA, Seluanov A, Gorbunova V, Berger SL. Gilbert MB, et al. Among authors: bonasio r. bioRxiv [Preprint]. 2024 Nov 8:2024.11.07.622473. doi: 10.1101/2024.11.07.622473. bioRxiv. 2024. PMID: 39574686 Free PMC article. Preprint.

2

A ligation-independent sequencing method reveals tRNA-derived RNAs with blocked 3' termini.

Scacchetti A, Shields EJ, Trigg NA, Lee GS, Wilusz JE, Conine CC, Bonasio R. Scacchetti A, et al. Among authors: bonasio r. Mol Cell. 2024 Oct 3;84(19):3843-3859.e8. doi: 10.1016/j.molcel.2024.07.008. Epub 2024 Aug 2. Mol Cell. 2024. PMID: 39096899

3

IL-12 drives the differentiation of human T follicular regulatory cells.

Castaño D, Wang S, Atencio-Garcia S, Shields EJ, Rico MC, Sharpe H, Bustamante J, Feng A, Le Coz C, Romberg N, Tobias JW, Utz PJ, Henrickson SE, Casanova JL, Bonasio R, Locci M. Castaño D, et al. Among authors: bonasio r. Sci Immunol. 2024 Jul 5;9(97):eadf2047. doi: 10.1126/sciimmunol.adf2047. Epub 2024 Jul 5. Sci Immunol. 2024. PMID: 38968337

4

Hormonal gatekeeping via the blood-brain barrier governs caste-specific behavior in ants.

Ju L, Glastad KM, Sheng L, Gospocic J, Kingwell CJ, Davidson SM, Kocher SD, Bonasio R, Berger SL. Ju L, et al. Among authors: bonasio r. Cell. 2023 Sep 28;186(20):4289-4309.e23. doi: 10.1016/j.cell.2023.08.002. Epub 2023 Sep 7. Cell. 2023. PMID: 37683635 Free PMC article.

5

An efficient cloning method to expand vector and restriction site compatibility of Golden Gate Assembly.

Sorida M, Bonasio R. Sorida M, et al. Among authors: bonasio r. Cell Rep Methods. 2023 Aug 22;3(8):100564. doi: 10.1016/j.crmeth.2023.100564. eCollection 2023 Aug 28. Cell Rep Methods. 2023. PMID: 37671021 Free PMC article.

6

Transcription factors interact with RNA to regulate genes.

Oksuz O, Henninger JE, Warneford-Thomson R, Zheng MM, Erb H, Vancura A, Overholt KJ, Hawken SW, Banani SF, Lauman R, Reich LN, Robertson AL, Hannett NM, Lee TI, Zon LI, Bonasio R, Young RA. Oksuz O, et al. Among authors: bonasio r. Mol Cell. 2023 Jul 20;83(14):2449-2463.e13. doi: 10.1016/j.molcel.2023.06.012. Epub 2023 Jul 3. Mol Cell. 2023. PMID: 37402367 Free PMC article.

7

A ligation-independent sequencing method reveals tRNA-derived RNAs with blocked 3' termini.

Scacchetti A, Shields EJ, Trigg NA, Wilusz JE, Conine CC, Bonasio R. Scacchetti A, et al. Among authors: bonasio r. bioRxiv [Preprint]. 2023 Jun 8:2023.06.06.543899. doi: 10.1101/2023.06.06.543899. bioRxiv. 2023. Update in: Mol Cell. 2024 Oct 3;84(19):3843-3859.e8. doi: 10.1016/j.molcel.2024.07.008 PMID: 37333231 Free PMC article. Updated. Preprint.

8

Long ant life span is maintained by a unique heat shock factor.

Glastad KM, Roessler J, Gospocic J, Bonasio R, Berger SL. Glastad KM, et al. Among authors: bonasio r. Genes Dev. 2023 May 1;37(9-10):398-417. doi: 10.1101/gad.350250.122. Epub 2023 May 31. Genes Dev. 2023. PMID: 37257919 Free PMC article.

9

DLBCL-associated NOTCH2 mutations escape ubiquitin-dependent degradation and promote chemoresistance.

Zhou N, Choi J, Grothusen G, Kim BJ, Ren D, Cao Z, Liu Y, Li Q, Inamdar A, Beer T, Tang HY, Perkey E, Maillard I, Bonasio R, Shi J, Ruella M, Wan L, Busino L. Zhou N, et al. Among authors: bonasio r. Blood. 2023 Sep 14;142(11):973-988. doi: 10.1182/blood.2022018752. Blood. 2023. PMID: 37235754 Free PMC article.

10

Expanding the Epitranscriptomic RNA Sequencing and Modification Mapping Mass Spectrometry Toolbox with Field Asymmetric Waveform Ion Mobility and Electrochemical Elution Liquid Chromatography.

Lauman R, Kim HJ, Pino LK, Scacchetti A, Xie Y, Robison F, Sidoli S, Bonasio R, Garcia BA. Lauman R, et al. Among authors: bonasio r. Anal Chem. 2023 Mar 28;95(12):5187-5195. doi: 10.1021/acs.analchem.2c04114. Epub 2023 Mar 14. Anal Chem. 2023. PMID: 36916610 Free PMC article.

11

Ensheathing glia promote increased lifespan and healthy brain aging.

Sheng L, Shields EJ, Gospocic J, Sorida M, Ju L, Byrns CN, Carranza F, Berger SL, Bonini N, Bonasio R. Sheng L, et al. Among authors: bonasio r. Aging Cell. 2023 May;22(5):e13803. doi: 10.1111/acel.13803. Epub 2023 Feb 24. Aging Cell. 2023. PMID: 36840361 Free PMC article.

12

Intrinsic maturation of sleep output neurons regulates sleep ontogeny in Drosophila.

Gong NN, Luong HNB, Dang AH, Mainwaring B, Shields E, Schmeckpeper K, Bonasio R, Kayser MS. Gong NN, et al. Among authors: bonasio r. Curr Biol. 2022 Sep 26;32(18):4025-4039.e3. doi: 10.1016/j.cub.2022.07.054. Epub 2022 Aug 18. Curr Biol. 2022. PMID: 35985328 Free PMC article.

13

Histone gene editing probes functions of H3K27 modifications in mammals.

Scacchetti A, Bonasio R. Scacchetti A, et al. Among authors: bonasio r. Nat Genet. 2022 Jun;54(6):746-747. doi: 10.1038/s41588-022-01096-x. Nat Genet. 2022. PMID: 35668297 Free PMC article.

14

Permethylation of Ribonucleosides Provides Enhanced Mass Spectrometry Quantification of Post-Transcriptional RNA Modifications.

Xie Y, Janssen KA, Scacchetti A, Porter EG, Lin Z, Bonasio R, Garcia BA. Xie Y, et al. Among authors: bonasio r. Anal Chem. 2022 May 24;94(20):7246-7254. doi: 10.1021/acs.analchem.2c00471. Epub 2022 May 12. Anal Chem. 2022. PMID: 35549217 Free PMC article.

15

A LAMP sequencing approach for high-throughput co-detection of SARS-CoV-2 and influenza virus in human saliva.

Warneford-Thomson R, Shah PP, Lundgren P, Lerner J, Morgan J, Davila A, Abella BS, Zaret K, Schug J, Jain R, Thaiss CA, Bonasio R. Warneford-Thomson R, et al. Among authors: bonasio r. Elife. 2022 May 9;11:e69949. doi: 10.7554/eLife.69949. Elife. 2022. PMID: 35532013 Free PMC article.

16

Genome annotation with long RNA reads reveals new patterns of gene expression and improves single-cell analyses in an ant brain.

Shields EJ, Sorida M, Sheng L, Sieriebriennikov B, Ding L, Bonasio R. Shields EJ, et al. Among authors: bonasio r. BMC Biol. 2021 Nov 27;19(1):254. doi: 10.1186/s12915-021-01188-w. BMC Biol. 2021. PMID: 34838024 Free PMC article.

17

Author Correction: Deficiency of TET3 leads to a genome-wide DNA hypermethylation episignature in human whole blood.

Levy MA, Beck DB, Metcalfe K, Douzgou S, Sithambaram S, Cottrell T, Ansar M, Kerkhof J, Mignot C, Nougues MC, Keren B, Moore HW, Oegema R, Giltay JC, Simon M, van Jaarsveld RH, Bos J, van Haelst M, Motazacker MM, Boon EMJ, Santen GWE, Ruivenkamp CAL, Alders M, Luperchio TR, Boukas L, Ramsey K, Narayanan V, Schaefer GB, Bonasio R, Doheny KF, Stevenson RE, Banka S, Sadikovic B, Fahrner JA. Levy MA, et al. Among authors: bonasio r. NPJ Genom Med. 2021 Nov 24;6(1):100. doi: 10.1038/s41525-021-00269-7. NPJ Genom Med. 2021. PMID: 34819528 Free PMC article. No abstract available.

18

Deficiency of TET3 leads to a genome-wide DNA hypermethylation episignature in human whole blood.

Levy MA, Beck DB, Metcalfe K, Douzgou S, Sithambaram S, Cottrell T, Ansar M, Kerkhof J, Mignot C, Nougues MC, Keren B, Moore HW, Oegema R, Giltay JC, Simon M, van Jaarsveld RH, Bos J, van Haelst M, Motazacker MM, Boon EMJ, Santen GWE, Ruivenkamp CAL, Alders M, Luperchio TR, Boukas L, Ramsey K, Narayanan V, Schaefer GB, Bonasio R, Doheny KF, Stevenson RE, Banka S, Sadikovic B, Fahrner JA. Levy MA, et al. Among authors: bonasio r. NPJ Genom Med. 2021 Nov 8;6(1):92. doi: 10.1038/s41525-021-00256-y. NPJ Genom Med. 2021. PMID: 34750377 Free PMC article.

19

Kr-h1 maintains distinct caste-specific neurotranscriptomes in response to socially regulated hormones.

Gospocic J, Glastad KM, Sheng L, Shields EJ, Berger SL, Bonasio R. Gospocic J, et al. Among authors: bonasio r. Cell. 2021 Nov 11;184(23):5807-5823.e14. doi: 10.1016/j.cell.2021.10.006. Epub 2021 Nov 4. Cell. 2021. PMID: 34739833 Free PMC article.

20

Correct dosage of X chromosome transcription is controlled by a nuclear pore component.

Aleman JR, Kuhn TM, Pascual-Garcia P, Gospocic J, Lan Y, Bonasio R, Little SC, Capelson M. Aleman JR, et al. Among authors: bonasio r. Cell Rep. 2021 Jun 15;35(11):109236. doi: 10.1016/j.celrep.2021.109236. Cell Rep. 2021. PMID: 34133927 Free PMC article.

21

Distinct PRC2 subunits regulate maintenance and establishment of Polycomb repression during differentiation.

Petracovici A, Bonasio R. Petracovici A, et al. Among authors: bonasio r. Mol Cell. 2021 Jun 17;81(12):2625-2639.e5. doi: 10.1016/j.molcel.2021.03.038. Epub 2021 Apr 21. Mol Cell. 2021. PMID: 33887196 Free PMC article.

22

Functionally distinct roles for TET-oxidized 5-methylcytosine bases in somatic reprogramming to pluripotency.

Caldwell BA, Liu MY, Prasasya RD, Wang T, DeNizio JE, Leu NA, Amoh NYA, Krapp C, Lan Y, Shields EJ, Bonasio R, Lengner CJ, Kohli RM, Bartolomei MS. Caldwell BA, et al. Among authors: bonasio r. Mol Cell. 2021 Feb 18;81(4):859-869.e8. doi: 10.1016/j.molcel.2020.11.045. Epub 2020 Dec 21. Mol Cell. 2021. PMID: 33352108 Free PMC article.

23

TET2 chemically modifies tRNAs and regulates tRNA fragment levels.

He C, Bozler J, Janssen KA, Wilusz JE, Garcia BA, Schorn AJ, Bonasio R. He C, et al. Among authors: bonasio r. Nat Struct Mol Biol. 2021 Jan;28(1):62-70. doi: 10.1038/s41594-020-00526-w. Epub 2020 Nov 23. Nat Struct Mol Biol. 2021. PMID: 33230319 Free PMC article.

24

Social reprogramming in ants induces longevity-associated glia remodeling.

Sheng L, Shields EJ, Gospocic J, Glastad KM, Ratchasanmuang P, Berger SL, Raj A, Little S, Bonasio R. Sheng L, et al. Among authors: bonasio r. Sci Adv. 2020 Aug 19;6(34):eaba9869. doi: 10.1126/sciadv.aba9869. eCollection 2020 Aug. Sci Adv. 2020. PMID: 32875108 Free PMC article.

25

Disruption of ATRX-RNA interactions uncovers roles in ATRX localization and PRC2 function.

Ren W, Medeiros N, Warneford-Thomson R, Wulfridge P, Yan Q, Bian J, Sidoli S, Garcia BA, Skordalakes E, Joyce E, Bonasio R, Sarma K. Ren W, et al. Among authors: bonasio r. Nat Commun. 2020 May 6;11(1):2219. doi: 10.1038/s41467-020-15902-9. Nat Commun. 2020. PMID: 32376827 Free PMC article.

26

Delineation of a Human Mendelian Disorder of the DNA Demethylation Machinery: TET3 Deficiency.

Beck DB, Petracovici A, He C, Moore HW, Louie RJ, Ansar M, Douzgou S, Sithambaram S, Cottrell T, Santos-Cortez RLP, Prijoles EJ, Bend R, Keren B, Mignot C, Nougues MC, Õunap K, Reimand T, Pajusalu S, Zahid M, Saqib MAN, Buratti J, Seaby EG, McWalter K, Telegrafi A, Baldridge D, Shinawi M, Leal SM, Schaefer GB, Stevenson RE, Banka S, Bonasio R, Fahrner JA. Beck DB, et al. Among authors: bonasio r. Am J Hum Genet. 2020 Feb 6;106(2):234-245. doi: 10.1016/j.ajhg.2019.12.007. Epub 2020 Jan 9. Am J Hum Genet. 2020. PMID: 31928709 Free PMC article.

27

Active and Repressed Chromatin Domains Exhibit Distinct Nucleosome Segregation during DNA Replication.

Escobar TM, Oksuz O, Saldaña-Meyer R, Descostes N, Bonasio R, Reinberg D. Escobar TM, et al. Among authors: bonasio r. Cell. 2019 Oct 31;179(4):953-963.e11. doi: 10.1016/j.cell.2019.10.009. Cell. 2019. PMID: 31675501 Free PMC article.

28

Mapping Native R-Loops Genome-wide Using a Targeted Nuclease Approach.

Yan Q, Shields EJ, Bonasio R, Sarma K. Yan Q, et al. Among authors: bonasio r. Cell Rep. 2019 Oct 29;29(5):1369-1380.e5. doi: 10.1016/j.celrep.2019.09.052. Cell Rep. 2019. PMID: 31665646 Free PMC article.

29

lncRedibly versatile: biochemical and biological functions of long noncoding RNAs.

Shields EJ, Petracovici AF, Bonasio R. Shields EJ, et al. Among authors: bonasio r. Biochem J. 2019 Apr 10;476(7):1083-1104. doi: 10.1042/BCJ20180440. Biochem J. 2019. PMID: 30971458 Free PMC article. Review.

30

RNA exploits an exposed regulatory site to inhibit the enzymatic activity of PRC2.

Zhang Q, McKenzie NJ, Warneford-Thomson R, Gail EH, Flanigan SF, Owen BM, Lauman R, Levina V, Garcia BA, Schittenhelm RB, Bonasio R, Davidovich C. Zhang Q, et al. Among authors: bonasio r. Nat Struct Mol Biol. 2019 Mar;26(3):237-247. doi: 10.1038/s41594-019-0197-y. Epub 2019 Mar 4. Nat Struct Mol Biol. 2019. PMID: 30833789 Free PMC article.

31

H3K9me3-heterochromatin loss at protein-coding genes enables developmental lineage specification.

Nicetto D, Donahue G, Jain T, Peng T, Sidoli S, Sheng L, Montavon T, Becker JS, Grindheim JM, Blahnik K, Garcia BA, Tan K, Bonasio R, Jenuwein T, Zaret KS. Nicetto D, et al. Among authors: bonasio r. Science. 2019 Jan 18;363(6424):294-297. doi: 10.1126/science.aau0583. Epub 2019 Jan 3. Science. 2019. PMID: 30606806 Free PMC article.

32

SAVER: gene expression recovery for single-cell RNA sequencing.

Huang M, Wang J, Torre E, Dueck H, Shaffer S, Bonasio R, Murray JI, Raj A, Li M, Zhang NR. Huang M, et al. Among authors: bonasio r. Nat Methods. 2018 Jul;15(7):539-542. doi: 10.1038/s41592-018-0033-z. Epub 2018 Jun 25. Nat Methods. 2018. PMID: 29941873 Free PMC article.

33

High-Quality Genome Assemblies Reveal Long Non-coding RNAs Expressed in Ant Brains.

Shields EJ, Sheng L, Weiner AK, Garcia BA, Bonasio R. Shields EJ, et al. Among authors: bonasio r. Cell Rep. 2018 Jun 5;23(10):3078-3090. doi: 10.1016/j.celrep.2018.05.014. Cell Rep. 2018. PMID: 29874592 Free PMC article.

34

Loss of KLHL6 promotes diffuse large B-cell lymphoma growth and survival by stabilizing the mRNA decay factor roquin2.

Choi J, Lee K, Ingvarsdottir K, Bonasio R, Saraf A, Florens L, Washburn MP, Tadros S, Green MR, Busino L. Choi J, et al. Among authors: bonasio r. Nat Cell Biol. 2018 May;20(5):586-596. doi: 10.1038/s41556-018-0084-5. Epub 2018 Apr 25. Nat Cell Biol. 2018. PMID: 29695787 Free PMC article.

35

Rare Cell Detection by Single-Cell RNA Sequencing as Guided by Single-Molecule RNA FISH.

Torre E, Dueck H, Shaffer S, Gospocic J, Gupte R, Bonasio R, Kim J, Murray J, Raj A. Torre E, et al. Among authors: bonasio r. Cell Syst. 2018 Feb 28;6(2):171-179.e5. doi: 10.1016/j.cels.2018.01.014. Epub 2018 Feb 14. Cell Syst. 2018. PMID: 29454938 Free PMC article.

36

Sample Preparation for Mass Spectrometry-based Identification of RNA-binding Regions.

Warneford-Thomson R, He C, Sidoli S, Garcia BA, Bonasio R. Warneford-Thomson R, et al. Among authors: bonasio r. J Vis Exp. 2017 Sep 28;(127):56004. doi: 10.3791/56004. J Vis Exp. 2017. PMID: 28994809 Free PMC article.

37

Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis.

Xiao J, Jin R, Yu X, Shen M, Wagner JD, Pai A, Song C, Zhuang M, Klasfeld S, He C, Santos AM, Helliwell C, Pruneda-Paz JL, Kay SA, Lin X, Cui S, Garcia MF, Clarenz O, Goodrich J, Zhang X, Austin RS, Bonasio R, Wagner D. Xiao J, et al. Among authors: bonasio r. Nat Genet. 2017 Oct;49(10):1546-1552. doi: 10.1038/ng.3937. Epub 2017 Aug 21. Nat Genet. 2017. PMID: 28825728 Free article.

38

Specialized odorant receptors in social insects that detect cuticular hydrocarbon cues and candidate pheromones.

Pask GM, Slone JD, Millar JG, Das P, Moreira JA, Zhou X, Bello J, Berger SL, Bonasio R, Desplan C, Reinberg D, Liebig J, Zwiebel LJ, Ray A. Pask GM, et al. Among authors: bonasio r. Nat Commun. 2017 Aug 17;8(1):297. doi: 10.1038/s41467-017-00099-1. Nat Commun. 2017. PMID: 28819196 Free PMC article.

39

The Neuropeptide Corazonin Controls Social Behavior and Caste Identity in Ants.

Gospocic J, Shields EJ, Glastad KM, Lin Y, Penick CA, Yan H, Mikheyev AS, Linksvayer TA, Garcia BA, Berger SL, Liebig J, Reinberg D, Bonasio R. Gospocic J, et al. Among authors: bonasio r. Cell. 2017 Aug 10;170(4):748-759.e12. doi: 10.1016/j.cell.2017.07.014. Cell. 2017. PMID: 28802044 Free PMC article.

40

An Engineered orco Mutation Produces Aberrant Social Behavior and Defective Neural Development in Ants.

Yan H, Opachaloemphan C, Mancini G, Yang H, Gallitto M, Mlejnek J, Leibholz A, Haight K, Ghaninia M, Huo L, Perry M, Slone J, Zhou X, Traficante M, Penick CA, Dolezal K, Gokhale K, Stevens K, Fetter-Pruneda I, Bonasio R, Zwiebel LJ, Berger SL, Liebig J, Reinberg D, Desplan C. Yan H, et al. Among authors: bonasio r. Cell. 2017 Aug 10;170(4):736-747.e9. doi: 10.1016/j.cell.2017.06.051. Cell. 2017. PMID: 28802043 Free PMC article.

41

Photoactivated In Vivo Proximity Labeling.

Beck DB, Bonasio R. Beck DB, et al. Among authors: bonasio r. Curr Protoc Chem Biol. 2017 Jun 19;9(2):128-146. doi: 10.1002/cpch.18. Curr Protoc Chem Biol. 2017. PMID: 28628203

42

A cut above.

He C, Bonasio R. He C, et al. Among authors: bonasio r. Elife. 2017 Feb 15;6:e25000. doi: 10.7554/eLife.25000. Elife. 2017. PMID: 28199181 Free PMC article.

43

RNA Binding to CBP Stimulates Histone Acetylation and Transcription.

Bose DA, Donahue G, Reinberg D, Shiekhattar R, Bonasio R, Berger SL. Bose DA, et al. Among authors: bonasio r. Cell. 2017 Jan 12;168(1-2):135-149.e22. doi: 10.1016/j.cell.2016.12.020. Epub 2017 Jan 12. Cell. 2017. PMID: 28086087 Free PMC article.

44

High-Resolution Mapping of RNA-Binding Regions in the Nuclear Proteome of Embryonic Stem Cells.

He C, Sidoli S, Warneford-Thomson R, Tatomer DC, Wilusz JE, Garcia BA, Bonasio R. He C, et al. Among authors: bonasio r. Mol Cell. 2016 Oct 20;64(2):416-430. doi: 10.1016/j.molcel.2016.09.034. Mol Cell. 2016. PMID: 27768875 Free PMC article.

45

Epigenetic (re)programming of caste-specific behavior in the ant Camponotus floridanus.

Simola DF, Graham RJ, Brady CM, Enzmann BL, Desplan C, Ray A, Zwiebel LJ, Bonasio R, Reinberg D, Liebig J, Berger SL. Simola DF, et al. Among authors: bonasio r. Science. 2016 Jan 1;351(6268):aac6633. doi: 10.1126/science.aac6633. Science. 2016. PMID: 26722000 Free PMC article.

46

The expanding epigenetic landscape of non-model organisms.

Bonasio R. Bonasio R. J Exp Biol. 2015 Jan 1;218(Pt 1):114-22. doi: 10.1242/jeb.110809. J Exp Biol. 2015. PMID: 25568458 Free PMC article. Review.

47

DNA methylation in social insects: how epigenetics can control behavior and longevity.

Yan H, Bonasio R, Simola DF, Liebig J, Berger SL, Reinberg D. Yan H, et al. Among authors: bonasio r. Annu Rev Entomol. 2015 Jan 7;60:435-52. doi: 10.1146/annurev-ento-010814-020803. Epub 2014 Oct 17. Annu Rev Entomol. 2015. PMID: 25341091 Review.

48

In vivo proximity labeling for the detection of protein-protein and protein-RNA interactions.

Beck DB, Narendra V, Drury WJ 3rd, Casey R, Jansen PW, Yuan ZF, Garcia BA, Vermeulen M, Bonasio R. Beck DB, et al. Among authors: bonasio r. J Proteome Res. 2014 Dec 5;13(12):6135-43. doi: 10.1021/pr500196b. Epub 2014 Oct 29. J Proteome Res. 2014. PMID: 25311790 Free PMC article.

49

Regulation of transcription by long noncoding RNAs.

Bonasio R, Shiekhattar R. Bonasio R, et al. Annu Rev Genet. 2014;48:433-55. doi: 10.1146/annurev-genet-120213-092323. Epub 2014 Sep 18. Annu Rev Genet. 2014. PMID: 25251851 Free PMC article. Review.

50

Eusocial insects as emerging models for behavioural epigenetics.

Yan H, Simola DF, Bonasio R, Liebig J, Berger SL, Reinberg D. Yan H, et al. Among authors: bonasio r. Nat Rev Genet. 2014 Oct;15(10):677-88. doi: 10.1038/nrg3787. Epub 2014 Sep 9. Nat Rev Genet. 2014. PMID: 25200663 Review.

51

Nascent RNA interaction keeps PRC2 activity poised and in check.

Kaneko S, Son J, Bonasio R, Shen SS, Reinberg D. Kaneko S, et al. Among authors: bonasio r. Genes Dev. 2014 Sep 15;28(18):1983-8. doi: 10.1101/gad.247940.114. Epub 2014 Aug 28. Genes Dev. 2014. PMID: 25170018 Free PMC article.

52

Interactions with RNA direct the Polycomb group protein SCML2 to chromatin where it represses target genes.

Bonasio R, Lecona E, Narendra V, Voigt P, Parisi F, Kluger Y, Reinberg D. Bonasio R, et al. Elife. 2014 Jul 1;3:e02637. doi: 10.7554/eLife.02637. Elife. 2014. PMID: 24986859 Free PMC article.

53

CTCF regulates the human p53 gene through direct interaction with its natural antisense transcript, Wrap53.

Saldaña-Meyer R, González-Buendía E, Guerrero G, Narendra V, Bonasio R, Recillas-Targa F, Reinberg D. Saldaña-Meyer R, et al. Among authors: bonasio r. Genes Dev. 2014 Apr 1;28(7):723-34. doi: 10.1101/gad.236869.113. Genes Dev. 2014. PMID: 24696455 Free PMC article.

54

The role of chromatin and epigenetics in the polyphenisms of ant castes.

Bonasio R. Bonasio R. Brief Funct Genomics. 2014 May;13(3):235-45. doi: 10.1093/bfgp/elt056. Epub 2014 Jan 24. Brief Funct Genomics. 2014. PMID: 24462993 Review.

55

Interactions between JARID2 and noncoding RNAs regulate PRC2 recruitment to chromatin.

Kaneko S, Bonasio R, Saldaña-Meyer R, Yoshida T, Son J, Nishino K, Umezawa A, Reinberg D. Kaneko S, et al. Among authors: bonasio r. Mol Cell. 2014 Jan 23;53(2):290-300. doi: 10.1016/j.molcel.2013.11.012. Epub 2013 Dec 26. Mol Cell. 2014. PMID: 24374312 Free PMC article.

56

Polycomb protein SCML2 regulates the cell cycle by binding and modulating CDK/CYCLIN/p21 complexes.

Lecona E, Rojas LA, Bonasio R, Johnston A, Fernández-Capetillo O, Reinberg D. Lecona E, et al. Among authors: bonasio r. PLoS Biol. 2013 Dec;11(12):e1001737. doi: 10.1371/journal.pbio.1001737. Epub 2013 Dec 17. PLoS Biol. 2013. PMID: 24358021 Free PMC article.

57

PRC2 binds active promoters and contacts nascent RNAs in embryonic stem cells.

Kaneko S, Son J, Shen SS, Reinberg D, Bonasio R. Kaneko S, et al. Among authors: bonasio r. Nat Struct Mol Biol. 2013 Nov;20(11):1258-64. doi: 10.1038/nsmb.2700. Epub 2013 Oct 20. Nat Struct Mol Biol. 2013. PMID: 24141703 Free PMC article.

58

SFMBT1 functions with LSD1 to regulate expression of canonical histone genes and chromatin-related factors.

Zhang J, Bonasio R, Strino F, Kluger Y, Holloway JK, Modzelewski AJ, Cohen PE, Reinberg D. Zhang J, et al. Among authors: bonasio r. Genes Dev. 2013 Apr 1;27(7):749-66. doi: 10.1101/gad.210963.112. Genes Dev. 2013. PMID: 23592795 Free PMC article.

59

A chromatin link to caste identity in the carpenter ant Camponotus floridanus.

Simola DF, Ye C, Mutti NS, Dolezal K, Bonasio R, Liebig J, Reinberg D, Berger SL. Simola DF, et al. Among authors: bonasio r. Genome Res. 2013 Mar;23(3):486-96. doi: 10.1101/gr.148361.112. Epub 2012 Dec 3. Genome Res. 2013. PMID: 23212948 Free PMC article.

60

SIRT3 functions in the nucleus in the control of stress-related gene expression.

Iwahara T, Bonasio R, Narendra V, Reinberg D. Iwahara T, et al. Among authors: bonasio r. Mol Cell Biol. 2012 Dec;32(24):5022-34. doi: 10.1128/MCB.00822-12. Epub 2012 Oct 8. Mol Cell Biol. 2012. PMID: 23045395 Free PMC article.

61

Genome-wide and caste-specific DNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator.

Bonasio R, Li Q, Lian J, Mutti NS, Jin L, Zhao H, Zhang P, Wen P, Xiang H, Ding Y, Jin Z, Shen SS, Wang Z, Wang W, Wang J, Berger SL, Liebig J, Zhang G, Reinberg D. Bonasio R, et al. Curr Biol. 2012 Oct 9;22(19):1755-64. doi: 10.1016/j.cub.2012.07.042. Epub 2012 Aug 9. Curr Biol. 2012. PMID: 22885060 Free PMC article.

62

PCGF homologs, CBX proteins, and RYBP define functionally distinct PRC1 family complexes.

Gao Z, Zhang J, Bonasio R, Strino F, Sawai A, Parisi F, Kluger Y, Reinberg D. Gao Z, et al. Among authors: bonasio r. Mol Cell. 2012 Feb 10;45(3):344-56. doi: 10.1016/j.molcel.2012.01.002. Mol Cell. 2012. PMID: 22325352 Free PMC article.

63

Emerging topics in epigenetics: ants, brains, and noncoding RNAs.

Bonasio R. Bonasio R. Ann N Y Acad Sci. 2012 Jul;1260:14-23. doi: 10.1111/j.1749-6632.2011.06363.x. Epub 2012 Jan 12. Ann N Y Acad Sci. 2012. PMID: 22239229

64

Chromatin in the nuclear landscape.

Beck DB, Bonasio R, Kaneko S, Li G, Li G, Margueron R, Oda H, Sarma K, Sims RJ 3rd, Son J, Trojer P, Reinberg D. Beck DB, et al. Among authors: bonasio r. Cold Spring Harb Symp Quant Biol. 2010;75:11-22. doi: 10.1101/sqb.2010.75.052. Epub 2011 Apr 18. Cold Spring Harb Symp Quant Biol. 2010. PMID: 21502408 Free PMC article. Review.

65

The C-terminal domain of RNA polymerase II is modified by site-specific methylation.

Sims RJ 3rd, Rojas LA, Beck DB, Bonasio R, Schüller R, Drury WJ 3rd, Eick D, Reinberg D. Sims RJ 3rd, et al. Among authors: bonasio r. Science. 2011 Apr 1;332(6025):99-103. doi: 10.1126/science.1202663. Science. 2011. PMID: 21454787 Free PMC article.

66

Molecular signals of epigenetic states.

Bonasio R, Tu S, Reinberg D. Bonasio R, et al. Science. 2010 Oct 29;330(6004):612-6. doi: 10.1126/science.1191078. Science. 2010. PMID: 21030644 Free PMC article. Review.

67

Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator.

Bonasio R, Zhang G, Ye C, Mutti NS, Fang X, Qin N, Donahue G, Yang P, Li Q, Li C, Zhang P, Huang Z, Berger SL, Reinberg D, Wang J, Liebig J. Bonasio R, et al. Science. 2010 Aug 27;329(5995):1068-71. doi: 10.1126/science.1192428. Science. 2010. PMID: 20798317 Free PMC article.

68

MBT domain proteins in development and disease.

Bonasio R, Lecona E, Reinberg D. Bonasio R, et al. Semin Cell Dev Biol. 2010 Apr;21(2):221-30. doi: 10.1016/j.semcdb.2009.09.010. Epub 2009 Sep 22. Semin Cell Dev Biol. 2010. PMID: 19778625 Free PMC article. Review.

69

Specific and covalent labeling of a membrane protein with organic fluorochromes and quantum dots.

Bonasio R, Carman CV, Kim E, Sage PT, Love KR, Mempel TR, Springer TA, von Andrian UH. Bonasio R, et al. Proc Natl Acad Sci U S A. 2007 Sep 11;104(37):14753-8. doi: 10.1073/pnas.0705201104. Epub 2007 Sep 4. Proc Natl Acad Sci U S A. 2007. PMID: 17785425 Free PMC article.

70

Clonal deletion of thymocytes by circulating dendritic cells homing to the thymus.

Bonasio R, Scimone ML, Schaerli P, Grabie N, Lichtman AH, von Andrian UH. Bonasio R, et al. Nat Immunol. 2006 Oct;7(10):1092-100. doi: 10.1038/ni1385. Epub 2006 Sep 3. Nat Immunol. 2006. PMID: 16951687

71

Generation, migration and function of circulating dendritic cells.

Bonasio R, von Andrian UH. Bonasio R, et al. Curr Opin Immunol. 2006 Aug;18(4):503-11. doi: 10.1016/j.coi.2006.05.011. Epub 2006 Jun 13. Curr Opin Immunol. 2006. PMID: 16777395 Review.

72

Activation of bone marrow-resident memory T cells by circulating, antigen-bearing dendritic cells.

Cavanagh LL, Bonasio R, Mazo IB, Halin C, Cheng G, van der Velden AW, Cariappa A, Chase C, Russell P, Starnbach MN, Koni PA, Pillai S, Weninger W, von Andrian UH. Cavanagh LL, et al. Among authors: bonasio r. Nat Immunol. 2005 Oct;6(10):1029-37. doi: 10.1038/ni1249. Epub 2005 Sep 11. Nat Immunol. 2005. PMID: 16155571 Free PMC article.

73

The S1P-analog FTY720 differentially modulates T-cell homing via HEV: T-cell-expressed S1P1 amplifies integrin activation in peripheral lymph nodes but not in Peyer patches.

Halin C, Scimone ML, Bonasio R, Gauguet JM, Mempel TR, Quackenbush E, Proia RL, Mandala S, von Andrian UH. Halin C, et al. Among authors: bonasio r. Blood. 2005 Aug 15;106(4):1314-22. doi: 10.1182/blood-2004-09-3687. Epub 2005 May 3. Blood. 2005. PMID: 15870184 Free PMC article.

74

Bone marrow is a major reservoir and site of recruitment for central memory CD8+ T cells.

Mazo IB, Honczarenko M, Leung H, Cavanagh LL, Bonasio R, Weninger W, Engelke K, Xia L, McEver RP, Koni PA, Silberstein LE, von Andrian UH. Mazo IB, et al. Among authors: bonasio r. Immunity. 2005 Feb;22(2):259-70. doi: 10.1016/j.immuni.2005.01.008. Immunity. 2005. PMID: 15723813 Free article.

75

Elimination in vivo of developing T cells by natural killer cells.

Schott E, Bonasio R, Ploegh HL. Schott E, et al. Among authors: bonasio r. J Exp Med. 2003 Oct 20;198(8):1213-24. doi: 10.1084/jem.20030918. J Exp Med. 2003. PMID: 14568980 Free PMC article.

76

Dendritic cells, loaded with recombinant bacteria expressing tumor antigens, induce a protective tumor-specific response.

Rescigno M, Valzasina B, Bonasio R, Urbano M, Ricciardi-Castagnoli P. Rescigno M, et al. Among authors: bonasio r. Clin Cancer Res. 2001 Mar;7(3 Suppl):865s-870s. Clin Cancer Res. 2001. PMID: 11300484

77

Dendritic cells express tight junction proteins and penetrate gut epithelial monolayers to sample bacteria.

Rescigno M, Urbano M, Valzasina B, Francolini M, Rotta G, Bonasio R, Granucci F, Kraehenbuhl JP, Ricciardi-Castagnoli P. Rescigno M, et al. Among authors: bonasio r. Nat Immunol. 2001 Apr;2(4):361-7. doi: 10.1038/86373. Nat Immunol. 2001. PMID: 11276208

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