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Page 1
Gut metagenomes reveal interactions between dietary restriction, ageing and the microbiome in genetically diverse mice.
Litichevskiy L, Considine M, Gill J, Shandar V, Cox TO, Descamps HC, Wright KM, Amses KR, Dohnalová L, Liou MJ, Tetlak M, Galindo-Fiallos MR, Wong AC, Lundgren P, Kim J, Uhr GT, Rahman RJ, Mason S, Merenstein C, Bushman FD, Raj A, Harding F, Chen Z, Prateek GV, Mullis M, Deighan AG, Robinson L, Tanes C, Bittinger K, Chakraborty M, Bhatt AS, Li H, Barnett I, Davenport ER, Broman KW, Levy M, Cohen RL, Botstein D, Freund A, Di Francesco A, Churchill GA, Li M, Thaiss CA. Litichevskiy L, et al. Among authors: thaiss ca. Nat Microbiol. 2025 Mar 31. doi: 10.1038/s41564-025-01963-3. Online ahead of print. Nat Microbiol. 2025. PMID: 40164832
Author Correction: Resolving tissue complexity by multimodal spatial omics modeling with MISO.
Coleman K, Schroeder A, Loth M, Zhang D, Park JH, Sung JY, Blank N, Cowan AJ, Qian X, Chen J, Jiang J, Yan H, Samarah LZ, Clemenceau JR, Jang I, Kim M, Barnfather I, Rabinowitz JD, Deng Y, Lee EB, Lazar A, Gao J, Furth EE, Hwang TH, Wang L, Thaiss CA, Hu J, Li M. Coleman K, et al. Among authors: thaiss ca. Nat Methods. 2025 Apr;22(4):874. doi: 10.1038/s41592-025-02645-y. Nat Methods. 2025. PMID: 40050700 No abstract available.
Dietary manipulation of intestinal microbes prolongs survival in a mouse model of Hirschsprung disease.
Tjaden NEB, Liou MJ, Sax SE, Lassoued N, Lou M, Schneider S, Beigel K, Eisenberg JD, Loeffler E, Anderson SE, Yan G, Litichevskiy L, Dohnalová L, Zhu Y, Jin DMJC, Raab J, Furth EE, Thompson Z, Rubenstein RC, Pilon N, Thaiss CA, Heuckeroth RO. Tjaden NEB, et al. Among authors: thaiss ca. bioRxiv [Preprint]. 2025 Feb 11:2025.02.10.637436. doi: 10.1101/2025.02.10.637436. bioRxiv. 2025. PMID: 39990395 Free PMC article. Preprint.
Author Correction: Resolving tissue complexity by multimodal spatial omics modeling with MISO.
Coleman K, Schroeder A, Loth M, Zhang D, Park JH, Sung JY, Blank N, Cowan AJ, Qian X, Chen J, Jiang J, Yan H, Samarah LZ, Clemenceau JR, Jang I, Kim M, Barnfather I, Rabinowitz JD, Deng Y, Lee EB, Lazar A, Gao J, Furth EE, Hwang TH, Wang L, Thaiss CA, Hu J, Li M. Coleman K, et al. Among authors: thaiss ca. Nat Methods. 2025 Mar;22(3):635. doi: 10.1038/s41592-025-02600-x. Nat Methods. 2025. PMID: 39856234 No abstract available.
Resolving tissue complexity by multimodal spatial omics modeling with MISO.
Coleman K, Schroeder A, Loth M, Zhang D, Park JH, Sung JY, Blank N, Cowan AJ, Qian X, Chen J, Jiang J, Yan H, Samarah LZ, Clemenceau JR, Jang I, Kim M, Barnfather I, Rabinowitz JD, Deng Y, Lee EB, Lazar A, Gao J, Furth EE, Hwang TH, Wang L, Thaiss CA, Hu J, Li M. Coleman K, et al. Among authors: thaiss ca. Nat Methods. 2025 Mar;22(3):530-538. doi: 10.1038/s41592-024-02574-2. Epub 2025 Jan 15. Nat Methods. 2025. PMID: 39815104
Dietary restriction impacts health and lifespan of genetically diverse mice.
Di Francesco A, Deighan AG, Litichevskiy L, Chen Z, Luciano A, Robinson L, Garland G, Donato H, Vincent M, Schott W, Wright KM, Raj A, Prateek GV, Mullis M, Hill WG, Zeidel ML, Peters LL, Harding F, Botstein D, Korstanje R, Thaiss CA, Freund A, Churchill GA. Di Francesco A, et al. Among authors: thaiss ca. Nature. 2024 Oct;634(8034):684-692. doi: 10.1038/s41586-024-08026-3. Epub 2024 Oct 9. Nature. 2024. PMID: 39385029 Free PMC article.
Mind the GAPS: Glia associated with psychological stress.
Blank N, Weiner M, Patel S, Köhler S, Thaiss CA. Blank N, et al. Among authors: thaiss ca. J Neuroendocrinol. 2024 Oct 9:e13451. doi: 10.1111/jne.13451. Online ahead of print. J Neuroendocrinol. 2024. PMID: 39384366 Review.
Microglia replacement by ER-Hoxb8 conditionally immortalized macrophages provides insight into Aicardi-Goutières Syndrome neuropathology.
Nemec KM, Uy G, Chaluvadi VS, Purnell FS, Elfayoumi B, O'Brien CA, Aisenberg WH, Lombroso SI, Guo X, Blank N, Oon CH, Yaqoob F, Temsamrit B, Rawat P, Thaiss CA, Wang Q, Bennett ML, Bennett FC. Nemec KM, et al. Among authors: thaiss ca. bioRxiv [Preprint]. 2024 Sep 20:2024.09.18.613629. doi: 10.1101/2024.09.18.613629. bioRxiv. 2024. PMID: 39345609 Free PMC article. Preprint.
The microbiota and T cells non-genetically modulate inherited phenotypes transgenerationally.
Harris JC, Trigg NA, Goshu B, Yokoyama Y, Dohnalová L, White EK, Harman A, Murga-Garrido SM, Ting-Chun Pan J, Bhanap P, Thaiss CA, Grice EA, Conine CC, Kambayashi T. Harris JC, et al. Among authors: thaiss ca. Cell Rep. 2024 Apr 23;43(4):114029. doi: 10.1016/j.celrep.2024.114029. Epub 2024 Apr 4. Cell Rep. 2024. PMID: 38573852 Free PMC article.
Targeting lipid nanoparticles to the blood-brain barrier to ameliorate acute ischemic stroke.
Nong J, Glassman PM, Shuvaev VV, Reyes-Esteves S, Descamps HC, Kiseleva RY, Papp TE, Alameh MG, Tam YK, Mui BL, Omo-Lamai S, Zamora ME, Shuvaeva T, Arguiri E, Gong X, Brysgel TV, Tan AW, Woolfork AG, Weljie A, Thaiss CA, Myerson JW, Weissman D, Kasner SE, Parhiz H, Muzykantov VR, Brenner JS, Marcos-Contreras OA. Nong J, et al. Among authors: thaiss ca. Mol Ther. 2024 May 1;32(5):1344-1358. doi: 10.1016/j.ymthe.2024.03.004. Epub 2024 Mar 7. Mol Ther. 2024. PMID: 38454606
Serotonin reduction in post-acute sequelae of viral infection.
Wong AC, Devason AS, Umana IC, Cox TO, Dohnalová L, Litichevskiy L, Perla J, Lundgren P, Etwebi Z, Izzo LT, Kim J, Tetlak M, Descamps HC, Park SL, Wisser S, McKnight AD, Pardy RD, Kim J, Blank N, Patel S, Thum K, Mason S, Beltra JC, Michieletto MF, Ngiow SF, Miller BM, Liou MJ, Madhu B, Dmitrieva-Posocco O, Huber AS, Hewins P, Petucci C, Chu CP, Baraniecki-Zwil G, Giron LB, Baxter AE, Greenplate AR, Kearns C, Montone K, Litzky LA, Feldman M, Henao-Mejia J, Striepen B, Ramage H, Jurado KA, Wellen KE, O'Doherty U, Abdel-Mohsen M, Landay AL, Keshavarzian A, Henrich TJ, Deeks SG, Peluso MJ, Meyer NJ, Wherry EJ, Abramoff BA, Cherry S, Thaiss CA, Levy M. Wong AC, et al. Among authors: thaiss ca. Cell. 2023 Oct 26;186(22):4851-4867.e20. doi: 10.1016/j.cell.2023.09.013. Epub 2023 Oct 16. Cell. 2023. PMID: 37848036 Free PMC article.
A subpopulation of lipogenic brown adipocytes drives thermogenic memory.
Lundgren P, Sharma PV, Dohnalová L, Coleman K, Uhr GT, Kircher S, Litichevskiy L, Bahnsen K, Descamps HC, Demetriadou C, Chan J, Chellappa K, Cox TO, Heyman Y, Pather SR, Shoffler C, Petucci C, Shalem O, Raj A, Baur JA, Snyder NW, Wellen KE, Levy M, Seale P, Li M, Thaiss CA. Lundgren P, et al. Among authors: thaiss ca. Nat Metab. 2023 Oct;5(10):1691-1705. doi: 10.1038/s42255-023-00893-w. Epub 2023 Oct 2. Nat Metab. 2023. PMID: 37783943 Free PMC article.
Acetate supplementation rescues social deficits and alters transcriptional regulation in prefrontal cortex of Shank3 deficient mice.
Osman A, Mervosh NL, Strat AN, Euston TJ, Zipursky G, Pollak RM, Meckel KR, Tyler SR, Chan KL, Buxbaum Grice A, Drapeau E, Litichevskiy L, Gill J, Zeldin SM, Thaiss CA, Buxbaum JD, Breen MS, Kiraly DD. Osman A, et al. Among authors: thaiss ca. Brain Behav Immun. 2023 Nov;114:311-324. doi: 10.1016/j.bbi.2023.08.020. Epub 2023 Aug 30. Brain Behav Immun. 2023. PMID: 37657643 Free PMC article.
A microbiome exercise.
Thaiss CA. Thaiss CA. Science. 2023 Jul 7;381(6653):38. doi: 10.1126/science.adi6329. Epub 2023 Jul 6. Science. 2023. PMID: 37410844
Targeting lipid nanoparticles to the blood brain barrier to ameliorate acute ischemic stroke.
Nong J, Glassman PM, Reyes-Esteves S, Descamps HC, Shuvaev VV, Kiseleva RY, Papp TE, Alameh MG, Tam YK, Mui BL, Omo-Lamai S, Zamora ME, Shuvaeva T, Arguiri E, Thaiss CA, Myerson JW, Weissman D, Kasner SE, Parhiz H, Muzykantov VR, Brenner JS, Marcos-Contreras OA. Nong J, et al. Among authors: thaiss ca. bioRxiv [Preprint]. 2023 Jun 13:2023.06.12.544645. doi: 10.1101/2023.06.12.544645. bioRxiv. 2023. Update in: Mol Ther. 2024 May 1;32(5):1344-1358. doi: 10.1016/j.ymthe.2024.03.004. PMID: 37398465 Free PMC article. Updated. Preprint.
Hierarchical contribution of individual lifestyle factors and their interactions on adenomatous and serrated polyp risk.
Kim J, Nath K, Schmidlin K, Schaufelberger H, Quattropani C, Vannini S, Mossi S, Thumshirn M, Manz M, Litichevskiy L, Fan J, Dmitrieva-Posocco O, Li M, Levy M, Schär P, Zwahlen M, Thaiss CA, Truninger K. Kim J, et al. Among authors: thaiss ca. J Gastroenterol. 2023 Sep;58(9):856-867. doi: 10.1007/s00535-023-02004-8. Epub 2023 Jun 10. J Gastroenterol. 2023. PMID: 37300599 Free PMC article.
The enteric nervous system relays psychological stress to intestinal inflammation.
Schneider KM, Blank N, Alvarez Y, Thum K, Lundgren P, Litichevskiy L, Sleeman M, Bahnsen K, Kim J, Kardo S, Patel S, Dohnalová L, Uhr GT, Descamps HC, Kircher S, McSween AM, Ardabili AR, Nemec KM, Jimenez MT, Glotfelty LG, Eisenberg JD, Furth EE, Henao-Mejia J, Bennett FC, Pierik MJ, Romberg-Camps M, Mujagic Z, Prinz M, Schneider CV, Wherry EJ, Bewtra M, Heuckeroth RO, Levy M, Thaiss CA. Schneider KM, et al. Among authors: thaiss ca. Cell. 2023 Jun 22;186(13):2823-2838.e20. doi: 10.1016/j.cell.2023.05.001. Epub 2023 May 25. Cell. 2023. PMID: 37236193 Free PMC article.
A microbiome-dependent gut-brain pathway regulates motivation for exercise.
Dohnalová L, Lundgren P, Carty JRE, Goldstein N, Wenski SL, Nanudorn P, Thiengmag S, Huang KP, Litichevskiy L, Descamps HC, Chellappa K, Glassman A, Kessler S, Kim J, Cox TO, Dmitrieva-Posocco O, Wong AC, Allman EL, Ghosh S, Sharma N, Sengupta K, Cornes B, Dean N, Churchill GA, Khurana TS, Sellmyer MA, FitzGerald GA, Patterson AD, Baur JA, Alhadeff AL, Helfrich EJN, Levy M, Betley JN, Thaiss CA. Dohnalová L, et al. Among authors: thaiss ca. Nature. 2022 Dec;612(7941):739-747. doi: 10.1038/s41586-022-05525-z. Epub 2022 Dec 14. Nature. 2022. PMID: 36517598 Free PMC article.
NAD precursors cycle between host tissues and the gut microbiome.
Chellappa K, McReynolds MR, Lu W, Zeng X, Makarov M, Hayat F, Mukherjee S, Bhat YR, Lingala SR, Shima RT, Descamps HC, Cox T, Ji L, Jankowski C, Chu Q, Davidson SM, Thaiss CA, Migaud ME, Rabinowitz JD, Baur JA. Chellappa K, et al. Among authors: thaiss ca. Cell Metab. 2022 Dec 6;34(12):1947-1959.e5. doi: 10.1016/j.cmet.2022.11.004. Cell Metab. 2022. PMID: 36476934 Free PMC article.
Microbiome complexity shapes metabolism.
Litichevskiy L, Thaiss CA. Litichevskiy L, et al. Among authors: thaiss ca. PLoS Biol. 2022 Sep 21;20(9):e3001793. doi: 10.1371/journal.pbio.3001793. eCollection 2022 Sep. PLoS Biol. 2022. PMID: 36129892 Free PMC article.
The miR-181 family regulates colonic inflammation through its activity in the intestinal epithelium.
Jimenez MT, Clark ML, Wright JM, Michieletto MF, Liu S, Erickson I, Dohnalova L, Uhr GT, Tello-Cajiao J, Joannas L, Williams A, Gagliani N, Bewtra M, Tomov VT, Thaiss CA, Henao-Mejia J. Jimenez MT, et al. Among authors: thaiss ca. J Exp Med. 2022 Dec 5;219(12):e20212278. doi: 10.1084/jem.20212278. Epub 2022 Sep 8. J Exp Med. 2022. PMID: 36074090 Free PMC article.
Multiscale 3D genome organization underlies ILC2 ontogenesis and allergic airway inflammation.
Michieletto MF, Tello-Cajiao JJ, Mowel WK, Chandra A, Yoon S, Joannas L, Clark ML, Jimenez MT, Wright JM, Lundgren P, Williams A, Thaiss CA, Vahedi G, Henao-Mejia J. Michieletto MF, et al. Among authors: thaiss ca. Nat Immunol. 2023 Jan;24(1):42-54. doi: 10.1038/s41590-022-01295-y. Epub 2022 Sep 1. Nat Immunol. 2023. PMID: 36050414 Free PMC article.
Metabolic control by the microbiome.
Cox TO, Lundgren P, Nath K, Thaiss CA. Cox TO, et al. Among authors: thaiss ca. Genome Med. 2022 Jul 29;14(1):80. doi: 10.1186/s13073-022-01092-0. Genome Med. 2022. PMID: 35906678 Free PMC article. Review.
When the brain feels the bugs.
Schneider KM, Thaiss CA. Schneider KM, et al. Among authors: thaiss ca. Immunity. 2022 Jun 14;55(6):976-978. doi: 10.1016/j.immuni.2022.05.008. Immunity. 2022. PMID: 35705000 Free article.
β-Hydroxybutyrate suppresses colorectal cancer.
Dmitrieva-Posocco O, Wong AC, Lundgren P, Golos AM, Descamps HC, Dohnalová L, Cramer Z, Tian Y, Yueh B, Eskiocak O, Egervari G, Lan Y, Liu J, Fan J, Kim J, Madhu B, Schneider KM, Khoziainova S, Andreeva N, Wang Q, Li N, Furth EE, Bailis W, Kelsen JR, Hamilton KE, Kaestner KH, Berger SL, Epstein JA, Jain R, Li M, Beyaz S, Lengner CJ, Katona BW, Grivennikov SI, Thaiss CA, Levy M. Dmitrieva-Posocco O, et al. Among authors: thaiss ca. Nature. 2022 May;605(7908):160-165. doi: 10.1038/s41586-022-04649-6. Epub 2022 Apr 27. Nature. 2022. PMID: 35477756 Free PMC article.
Pyrimidine inhibitors synergize with nucleoside analogues to block SARS-CoV-2.
Schultz DC, Johnson RM, Ayyanathan K, Miller J, Whig K, Kamalia B, Dittmar M, Weston S, Hammond HL, Dillen C, Ardanuy J, Taylor L, Lee JS, Li M, Lee E, Shoffler C, Petucci C, Constant S, Ferrer M, Thaiss CA, Frieman MB, Cherry S. Schultz DC, et al. Among authors: thaiss ca. Nature. 2022 Apr;604(7904):134-140. doi: 10.1038/s41586-022-04482-x. Epub 2022 Feb 7. Nature. 2022. PMID: 35130559 Free PMC article.
Early prediction of decompensation (EPOD) score: Non-invasive determination of cirrhosis decompensation risk.
Schneider ARP, Schneider CV, Schneider KM, Baier V, Schaper S, Diedrich C, Coboeken K, Mayer H, Gu W, Trebicka J, Blank LM, Burghaus R, Lippert J, Rader DJ, Thaiss CA, Schlender JF, Trautwein C, Kuepfer L. Schneider ARP, et al. Among authors: thaiss ca. Liver Int. 2022 Mar;42(3):640-650. doi: 10.1111/liv.15161. Epub 2022 Feb 3. Liver Int. 2022. PMID: 35007409
Aging disrupts circadian gene regulation and function in macrophages.
Blacher E, Tsai C, Litichevskiy L, Shipony Z, Iweka CA, Schneider KM, Chuluun B, Heller HC, Menon V, Thaiss CA, Andreasson KI. Blacher E, et al. Among authors: thaiss ca. Nat Immunol. 2022 Feb;23(2):229-236. doi: 10.1038/s41590-021-01083-0. Epub 2021 Dec 23. Nat Immunol. 2022. PMID: 34949832 Free PMC article.
NAD+ flux is maintained in aged mice despite lower tissue concentrations.
McReynolds MR, Chellappa K, Chiles E, Jankowski C, Shen Y, Chen L, Descamps HC, Mukherjee S, Bhat YR, Lingala SR, Chu Q, Botolin P, Hayat F, Doke T, Susztak K, Thaiss CA, Lu W, Migaud ME, Su X, Rabinowitz JD, Baur JA. McReynolds MR, et al. Among authors: thaiss ca. Cell Syst. 2021 Dec 15;12(12):1160-1172.e4. doi: 10.1016/j.cels.2021.09.001. Epub 2021 Sep 23. Cell Syst. 2021. PMID: 34559996 Free PMC article.
Dietary suppression of MHC class II expression in intestinal epithelial cells enhances intestinal tumorigenesis.
Beyaz S, Chung C, Mou H, Bauer-Rowe KE, Xifaras ME, Ergin I, Dohnalova L, Biton M, Shekhar K, Eskiocak O, Papciak K, Ozler K, Almeqdadi M, Yueh B, Fein M, Annamalai D, Valle-Encinas E, Erdemir A, Dogum K, Shah V, Alici-Garipcan A, Meyer HV, Özata DM, Elinav E, Kucukural A, Kumar P, McAleer JP, Fox JG, Thaiss CA, Regev A, Roper J, Orkin SH, Yilmaz ÖH. Beyaz S, et al. Among authors: thaiss ca. Cell Stem Cell. 2021 Nov 4;28(11):1922-1935.e5. doi: 10.1016/j.stem.2021.08.007. Epub 2021 Sep 15. Cell Stem Cell. 2021. PMID: 34529935 Free PMC article.
A dietary source of antibiotic tolerance.
Lundgren P, Sharma PV, Thaiss CA. Lundgren P, et al. Among authors: thaiss ca. Cell Metab. 2021 Aug 3;33(8):1516-1518. doi: 10.1016/j.cmet.2021.07.013. Cell Metab. 2021. PMID: 34348098 Free article.
Pyrimidine biosynthesis inhibitors synergize with nucleoside analogs to block SARS-CoV-2 infection.
Schultz DC, Johnson RM, Ayyanathan K, Miller J, Whig K, Kamalia B, Dittmar M, Weston S, Hammond HL, Dillen C, Castellana L, Lee JS, Li M, Lee E, Constant S, Ferrer M, Thaiss CA, Frieman MB, Cherry S. Schultz DC, et al. Among authors: thaiss ca. bioRxiv [Preprint]. 2021 Jun 24:2021.06.24.449811. doi: 10.1101/2021.06.24.449811. bioRxiv. 2021. Update in: Nature. 2022 Apr;604(7904):134-140. doi: 10.1038/s41586-022-04482-x. PMID: 34189531 Free PMC article. Updated. Preprint.
Pharmacological activation of STING blocks SARS-CoV-2 infection.
Li M, Ferretti M, Ying B, Descamps H, Lee E, Dittmar M, Lee JS, Whig K, Kamalia B, Dohnalová L, Uhr G, Zarkoob H, Chen YC, Ramage H, Ferrer M, Lynch K, Schultz DC, Thaiss CA, Diamond MS, Cherry S. Li M, et al. Among authors: thaiss ca. Sci Immunol. 2021 May 18;6(59):eabi9007. doi: 10.1126/sciimmunol.abi9007. Sci Immunol. 2021. PMID: 34010142 Free PMC article.
Intestinal Dysbiosis Amplifies Acetaminophen-Induced Acute Liver Injury.
Schneider KM, Elfers C, Ghallab A, Schneider CV, Galvez EJC, Mohs A, Gui W, Candels LS, Wirtz TH, Zuehlke S, Spiteller M, Myllys M, Roulet A, Ouzerdine A, Lelouvier B, Kilic K, Liao L, Nier A, Latz E, Bergheim I, Thaiss CA, Hengstler JG, Strowig T, Trautwein C. Schneider KM, et al. Among authors: thaiss ca. Cell Mol Gastroenterol Hepatol. 2021;11(4):909-933. doi: 10.1016/j.jcmgh.2020.11.002. Epub 2020 Nov 12. Cell Mol Gastroenterol Hepatol. 2021. PMID: 33189892 Free PMC article.
Host-Microbiome Interactions in the Era of Single-Cell Biology.
Sharma PV, Thaiss CA. Sharma PV, et al. Among authors: thaiss ca. Front Cell Infect Microbiol. 2020 Oct 14;10:569070. doi: 10.3389/fcimb.2020.569070. eCollection 2020. Front Cell Infect Microbiol. 2020. PMID: 33163417 Free PMC article. Review.
Diet Diurnally Regulates Small Intestinal Microbiome-Epithelial-Immune Homeostasis and Enteritis.
Tuganbaev T, Mor U, Bashiardes S, Liwinski T, Nobs SP, Leshem A, Dori-Bachash M, Thaiss CA, Pinker EY, Ratiner K, Adlung L, Federici S, Kleimeyer C, Moresi C, Yamada T, Cohen Y, Zhang X, Massalha H, Massasa E, Kuperman Y, Koni PA, Harmelin A, Gao N, Itzkovitz S, Honda K, Shapiro H, Elinav E. Tuganbaev T, et al. Among authors: thaiss ca. Cell. 2020 Sep 17;182(6):1441-1459.e21. doi: 10.1016/j.cell.2020.08.027. Epub 2020 Sep 3. Cell. 2020. PMID: 32888430 Free article.
The Microbiome as a Circadian Coordinator of Metabolism.
Alvarez Y, Glotfelty LG, Blank N, Dohnalová L, Thaiss CA. Alvarez Y, et al. Among authors: thaiss ca. Endocrinology. 2020 Jun 1;161(6):bqaa059. doi: 10.1210/endocr/bqaa059. Endocrinology. 2020. PMID: 32291454 Free PMC article. Review.
The microbiome-adipose tissue axis in systemic metabolism.
Lundgren P, Thaiss CA. Lundgren P, et al. Among authors: thaiss ca. Am J Physiol Gastrointest Liver Physiol. 2020 Apr 1;318(4):G717-G724. doi: 10.1152/ajpgi.00304.2019. Epub 2020 Feb 18. Am J Physiol Gastrointest Liver Physiol. 2020. PMID: 32068441 Free PMC article. Review.
Lipid-Associated Macrophages Control Metabolic Homeostasis in a Trem2-Dependent Manner.
Jaitin DA, Adlung L, Thaiss CA, Weiner A, Li B, Descamps H, Lundgren P, Bleriot C, Liu Z, Deczkowska A, Keren-Shaul H, David E, Zmora N, Eldar SM, Lubezky N, Shibolet O, Hill DA, Lazar MA, Colonna M, Ginhoux F, Shapiro H, Elinav E, Amit I. Jaitin DA, et al. Among authors: thaiss ca. Cell. 2019 Jul 25;178(3):686-698.e14. doi: 10.1016/j.cell.2019.05.054. Epub 2019 Jun 27. Cell. 2019. PMID: 31257031 Free PMC article.
IL-23-producing IL-10Rα-deficient gut macrophages elicit an IL-22-driven proinflammatory epithelial cell response.
Bernshtein B, Curato C, Ioannou M, Thaiss CA, Gross-Vered M, Kolesnikov M, Wang Q, David E, Chappell-Maor L, Harmelin A, Elinav E, Thakker P, Papayannopoulos V, Jung S. Bernshtein B, et al. Among authors: thaiss ca. Sci Immunol. 2019 Jun 14;4(36):eaau6571. doi: 10.1126/sciimmunol.aau6571. Sci Immunol. 2019. PMID: 31201258 Free PMC article.
The path toward using microbial metabolites as therapies.
Descamps HC, Herrmann B, Wiredu D, Thaiss CA. Descamps HC, et al. Among authors: thaiss ca. EBioMedicine. 2019 Jun;44:747-754. doi: 10.1016/j.ebiom.2019.05.063. Epub 2019 Jun 11. EBioMedicine. 2019. PMID: 31201140 Free PMC article. Review.
The gut microbiota regulates white adipose tissue inflammation and obesity via a family of microRNAs.
Virtue AT, McCright SJ, Wright JM, Jimenez MT, Mowel WK, Kotzin JJ, Joannas L, Basavappa MG, Spencer SP, Clark ML, Eisennagel SH, Williams A, Levy M, Manne S, Henrickson SE, Wherry EJ, Thaiss CA, Elinav E, Henao-Mejia J. Virtue AT, et al. Among authors: thaiss ca. Sci Transl Med. 2019 Jun 12;11(496):eaav1892. doi: 10.1126/scitranslmed.aav1892. Sci Transl Med. 2019. PMID: 31189717 Free PMC article.
Digitalizing the Microbiome for Human Health.
Nath K, Thaiss CA. Nath K, et al. Among authors: thaiss ca. mSystems. 2019 Jun 4;4(3):e00129-19. doi: 10.1128/mSystems.00129-19. mSystems. 2019. PMID: 31164407 Free PMC article.
The Dimension of Time in Host-Microbiome Interactions.
Uhr GT, Dohnalová L, Thaiss CA. Uhr GT, et al. Among authors: thaiss ca. mSystems. 2019 Feb 19;4(1):e00216-18. doi: 10.1128/mSystems.00216-18. eCollection 2019 Jan-Feb. mSystems. 2019. PMID: 30801030 Free PMC article.
Microbiome dynamics in obesity.
Thaiss CA. Thaiss CA. Science. 2018 Nov 23;362(6417):903-904. doi: 10.1126/science.aav6870. Science. 2018. PMID: 30467161 No abstract available.
Hyperglycemia drives intestinal barrier dysfunction and risk for enteric infection.
Thaiss CA, Levy M, Grosheva I, Zheng D, Soffer E, Blacher E, Braverman S, Tengeler AC, Barak O, Elazar M, Ben-Zeev R, Lehavi-Regev D, Katz MN, Pevsner-Fischer M, Gertler A, Halpern Z, Harmelin A, Aamar S, Serradas P, Grosfeld A, Shapiro H, Geiger B, Elinav E. Thaiss CA, et al. Science. 2018 Mar 23;359(6382):1376-1383. doi: 10.1126/science.aar3318. Epub 2018 Mar 8. Science. 2018. PMID: 29519916 Free article.
Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation.
Atarashi K, Suda W, Luo C, Kawaguchi T, Motoo I, Narushima S, Kiguchi Y, Yasuma K, Watanabe E, Tanoue T, Thaiss CA, Sato M, Toyooka K, Said HS, Yamagami H, Rice SA, Gevers D, Johnson RC, Segre JA, Chen K, Kolls JK, Elinav E, Morita H, Xavier RJ, Hattori M, Honda K. Atarashi K, et al. Among authors: thaiss ca. Science. 2017 Oct 20;358(6361):359-365. doi: 10.1126/science.aan4526. Science. 2017. PMID: 29051379 Free PMC article.
Potential role of intratumor bacteria in mediating tumor resistance to the chemotherapeutic drug gemcitabine.
Geller LT, Barzily-Rokni M, Danino T, Jonas OH, Shental N, Nejman D, Gavert N, Zwang Y, Cooper ZA, Shee K, Thaiss CA, Reuben A, Livny J, Avraham R, Frederick DT, Ligorio M, Chatman K, Johnston SE, Mosher CM, Brandis A, Fuks G, Gurbatri C, Gopalakrishnan V, Kim M, Hurd MW, Katz M, Fleming J, Maitra A, Smith DA, Skalak M, Bu J, Michaud M, Trauger SA, Barshack I, Golan T, Sandbank J, Flaherty KT, Mandinova A, Garrett WS, Thayer SP, Ferrone CR, Huttenhower C, Bhatia SN, Gevers D, Wargo JA, Golub TR, Straussman R. Geller LT, et al. Among authors: thaiss ca. Science. 2017 Sep 15;357(6356):1156-1160. doi: 10.1126/science.aah5043. Science. 2017. PMID: 28912244 Free PMC article.
Circadian Coordination of Antimicrobial Responses.
Tognini P, Thaiss CA, Elinav E, Sassone-Corsi P. Tognini P, et al. Among authors: thaiss ca. Cell Host Microbe. 2017 Aug 9;22(2):185-192. doi: 10.1016/j.chom.2017.07.007. Cell Host Microbe. 2017. PMID: 28799904 Free article. Review.
Dysbiosis and the immune system.
Levy M, Kolodziejczyk AA, Thaiss CA, Elinav E. Levy M, et al. Among authors: thaiss ca. Nat Rev Immunol. 2017 Apr;17(4):219-232. doi: 10.1038/nri.2017.7. Epub 2017 Mar 6. Nat Rev Immunol. 2017. PMID: 28260787 Review.
NLRP6: A Multifaceted Innate Immune Sensor.
Levy M, Shapiro H, Thaiss CA, Elinav E. Levy M, et al. Among authors: thaiss ca. Trends Immunol. 2017 Apr;38(4):248-260. doi: 10.1016/j.it.2017.01.001. Epub 2017 Feb 15. Trends Immunol. 2017. PMID: 28214100 Review.
Microbiota Diurnal Rhythmicity Programs Host Transcriptome Oscillations.
Thaiss CA, Levy M, Korem T, Dohnalová L, Shapiro H, Jaitin DA, David E, Winter DR, Gury-BenAri M, Tatirovsky E, Tuganbaev T, Federici S, Zmora N, Zeevi D, Dori-Bachash M, Pevsner-Fischer M, Kartvelishvily E, Brandis A, Harmelin A, Shibolet O, Halpern Z, Honda K, Amit I, Segal E, Elinav E. Thaiss CA, et al. Cell. 2016 Dec 1;167(6):1495-1510.e12. doi: 10.1016/j.cell.2016.11.003. Cell. 2016. PMID: 27912059 Free article.
Persistent microbiome alterations modulate the rate of post-dieting weight regain.
Thaiss CA, Itav S, Rothschild D, Meijer MT, Levy M, Moresi C, Dohnalová L, Braverman S, Rozin S, Malitsky S, Dori-Bachash M, Kuperman Y, Biton I, Gertler A, Harmelin A, Shapiro H, Halpern Z, Aharoni A, Segal E, Elinav E. Thaiss CA, et al. Nature. 2016 Dec 22;540(7634):544-551. doi: 10.1038/nature20796. Epub 2016 Nov 24. Nature. 2016. PMID: 27906159
The Spectrum and Regulatory Landscape of Intestinal Innate Lymphoid Cells Are Shaped by the Microbiome.
Gury-BenAri M, Thaiss CA, Serafini N, Winter DR, Giladi A, Lara-Astiaso D, Levy M, Salame TM, Weiner A, David E, Shapiro H, Dori-Bachash M, Pevsner-Fischer M, Lorenzo-Vivas E, Keren-Shaul H, Paul F, Harmelin A, Eberl G, Itzkovitz S, Tanay A, Di Santo JP, Elinav E, Amit I. Gury-BenAri M, et al. Among authors: thaiss ca. Cell. 2016 Aug 25;166(5):1231-1246.e13. doi: 10.1016/j.cell.2016.07.043. Epub 2016 Aug 18. Cell. 2016. PMID: 27545347 Free article.
The microbiome and innate immunity.
Thaiss CA, Zmora N, Levy M, Elinav E. Thaiss CA, et al. Nature. 2016 Jul 7;535(7610):65-74. doi: 10.1038/nature18847. Nature. 2016. PMID: 27383981 Review.
Microglia development follows a stepwise program to regulate brain homeostasis.
Matcovitch-Natan O, Winter DR, Giladi A, Vargas Aguilar S, Spinrad A, Sarrazin S, Ben-Yehuda H, David E, Zelada González F, Perrin P, Keren-Shaul H, Gury M, Lara-Astaiso D, Thaiss CA, Cohen M, Bahar Halpern K, Baruch K, Deczkowska A, Lorenzo-Vivas E, Itzkovitz S, Elinav E, Sieweke MH, Schwartz M, Amit I. Matcovitch-Natan O, et al. Among authors: thaiss ca. Science. 2016 Aug 19;353(6301):aad8670. doi: 10.1126/science.aad8670. Epub 2016 Jun 23. Science. 2016. PMID: 27338705
Integration of Innate Immune Signaling.
Thaiss CA, Levy M, Itav S, Elinav E. Thaiss CA, et al. Trends Immunol. 2016 Feb;37(2):84-101. doi: 10.1016/j.it.2015.12.003. Epub 2016 Jan 2. Trends Immunol. 2016. PMID: 26755064 Review.
Microbiota-Modulated Metabolites Shape the Intestinal Microenvironment by Regulating NLRP6 Inflammasome Signaling.
Levy M, Thaiss CA, Zeevi D, Dohnalová L, Zilberman-Schapira G, Mahdi JA, David E, Savidor A, Korem T, Herzig Y, Pevsner-Fischer M, Shapiro H, Christ A, Harmelin A, Halpern Z, Latz E, Flavell RA, Amit I, Segal E, Elinav E. Levy M, et al. Among authors: thaiss ca. Cell. 2015 Dec 3;163(6):1428-43. doi: 10.1016/j.cell.2015.10.048. Cell. 2015. PMID: 26638072 Free PMC article.
Corrigendum: NLRP10 is a NOD-like receptor essential to initiate adaptive immunity by dendritic cells.
Eisenbarth SC, Williams A, Colegio OR, Meng H, Strowig T, Rongvaux A, Henao-Mejia J, Thaiss CA, Joly S, Gonzalez DG, Xu L, Zenewicz LA, Haberman AM, Elinav E, Kleinstein SH, Sutterwala FS, Flavell RA. Eisenbarth SC, et al. Among authors: thaiss ca. Nature. 2016 Feb 25;530(7591):504. doi: 10.1038/nature16074. Epub 2015 Nov 25. Nature. 2016. PMID: 26605525 No abstract available.
Q&A: Chance encounters.
Beutler B, Thaiss CA. Beutler B, et al. Among authors: thaiss ca. Nature. 2015 Oct 22;526(7574):S59-60. doi: 10.1038/526S59a. Nature. 2015. PMID: 26488245 No abstract available.
Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples.
Korem T, Zeevi D, Suez J, Weinberger A, Avnit-Sagi T, Pompan-Lotan M, Matot E, Jona G, Harmelin A, Cohen N, Sirota-Madi A, Thaiss CA, Pevsner-Fischer M, Sorek R, Xavier R, Elinav E, Segal E. Korem T, et al. Among authors: thaiss ca. Science. 2015 Sep 4;349(6252):1101-1106. doi: 10.1126/science.aac4812. Epub 2015 Jul 30. Science. 2015. PMID: 26229116 Free PMC article. Clinical Trial.
Taming the inflammasome.
Levy M, Thaiss CA, Elinav E. Levy M, et al. Among authors: thaiss ca. Nat Med. 2015 Mar;21(3):213-5. doi: 10.1038/nm.3808. Nat Med. 2015. PMID: 25742454 No abstract available.
Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis.
Thaiss CA, Zeevi D, Levy M, Zilberman-Schapira G, Suez J, Tengeler AC, Abramson L, Katz MN, Korem T, Zmora N, Kuperman Y, Biton I, Gilad S, Harmelin A, Shapiro H, Halpern Z, Segal E, Elinav E. Thaiss CA, et al. Cell. 2014 Oct 23;159(3):514-29. doi: 10.1016/j.cell.2014.09.048. Epub 2014 Oct 16. Cell. 2014. PMID: 25417104 Free article.
Artificial sweeteners induce glucose intolerance by altering the gut microbiota.
Suez J, Korem T, Zeevi D, Zilberman-Schapira G, Thaiss CA, Maza O, Israeli D, Zmora N, Gilad S, Weinberger A, Kuperman Y, Harmelin A, Kolodkin-Gal I, Shapiro H, Halpern Z, Segal E, Elinav E. Suez J, et al. Among authors: thaiss ca. Nature. 2014 Oct 9;514(7521):181-6. doi: 10.1038/nature13793. Epub 2014 Sep 17. Nature. 2014. PMID: 25231862
Exploring new horizons in microbiome research.
Thaiss CA, Elinav E. Thaiss CA, et al. Cell Host Microbe. 2014 Jun 11;15(6):662-7. doi: 10.1016/j.chom.2014.05.016. Cell Host Microbe. 2014. PMID: 24922569 Free article.
Inflammasomes and metabolic disease.
Henao-Mejia J, Elinav E, Thaiss CA, Flavell RA. Henao-Mejia J, et al. Among authors: thaiss ca. Annu Rev Physiol. 2014;76:57-78. doi: 10.1146/annurev-physiol-021113-170324. Epub 2013 Nov 21. Annu Rev Physiol. 2014. PMID: 24274736 Review.
Role of the intestinal microbiome in liver disease.
Henao-Mejia J, Elinav E, Thaiss CA, Licona-Limon P, Flavell RA. Henao-Mejia J, et al. Among authors: thaiss ca. J Autoimmun. 2013 Oct;46:66-73. doi: 10.1016/j.jaut.2013.07.001. Epub 2013 Sep 24. J Autoimmun. 2013. PMID: 24075647 Review.
The intestinal microbiota in chronic liver disease.
Henao-Mejia J, Elinav E, Thaiss CA, Flavell RA. Henao-Mejia J, et al. Among authors: thaiss ca. Adv Immunol. 2013;117:73-97. doi: 10.1016/B978-0-12-410524-9.00003-7. Adv Immunol. 2013. PMID: 23611286 Review.
NLRP10 is a NOD-like receptor essential to initiate adaptive immunity by dendritic cells.
Eisenbarth SC, Williams A, Colegio OR, Meng H, Strowig T, Rongvaux A, Henao-Mejia J, Thaiss CA, Joly S, Gonzalez DG, Xu L, Zenewicz LA, Haberman AM, Elinav E, Kleinstein SH, Sutterwala FS, Flavell RA. Eisenbarth SC, et al. Among authors: thaiss ca. Nature. 2012 Apr 25;484(7395):510-3. doi: 10.1038/nature11012. Nature. 2012. PMID: 22538615 Free PMC article.
Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity.
Henao-Mejia J, Elinav E, Jin C, Hao L, Mehal WZ, Strowig T, Thaiss CA, Kau AL, Eisenbarth SC, Jurczak MJ, Camporez JP, Shulman GI, Gordon JI, Hoffman HM, Flavell RA. Henao-Mejia J, et al. Among authors: thaiss ca. Nature. 2012 Feb 1;482(7384):179-85. doi: 10.1038/nature10809. Nature. 2012. PMID: 22297845 Free PMC article.
NLRP6 inflammasome regulates colonic microbial ecology and risk for colitis.
Elinav E, Strowig T, Kau AL, Henao-Mejia J, Thaiss CA, Booth CJ, Peaper DR, Bertin J, Eisenbarth SC, Gordon JI, Flavell RA. Elinav E, et al. Among authors: thaiss ca. Cell. 2011 May 27;145(5):745-57. doi: 10.1016/j.cell.2011.04.022. Epub 2011 May 12. Cell. 2011. PMID: 21565393 Free PMC article.