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A Standardized Brain Molecular Atlas: A Resource for Systems Modeling and Simulation.

Shichkova P, Coggan JS, Markram H, Keller D. Shichkova P, et al. Among authors: coggan js. Front Mol Neurosci. 2021 Nov 10;14:604559. doi: 10.3389/fnmol.2021.604559. eCollection 2021. Front Mol Neurosci. 2021. PMID: 34858137 Free PMC article.

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A Machine-Generated View of the Role of Blood Glucose Levels in the Severity of COVID-19.

Logette E, Lorin C, Favreau C, Oshurko E, Coggan JS, Casalegno F, Sy MF, Monney C, Bertschy M, Delattre E, Fonta PA, Krepl J, Schmidt S, Keller D, Kerrien S, Scantamburlo E, Kaufmann AK, Markram H. Logette E, et al. Among authors: coggan js. Front Public Health. 2021 Jul 28;9:695139. doi: 10.3389/fpubh.2021.695139. eCollection 2021. Front Public Health. 2021. PMID: 34395368 Free PMC article.

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Physiological Dynamics in Demyelinating Diseases: Unraveling Complex Relationships through Computer Modeling.

Coggan JS, Bittner S, Stiefel KM, Meuth SG, Prescott SA. Coggan JS, et al. Int J Mol Sci. 2015 Sep 7;16(9):21215-36. doi: 10.3390/ijms160921215. Int J Mol Sci. 2015. PMID: 26370960 Free PMC article. Review.

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Metaball skinning of synthetic astroglial morphologies into realistic mesh models for visual analytics and in silico simulations.

Abdellah M, Foni A, Zisis E, Guerrero NR, Lapere S, Coggan JS, Keller D, Markram H, Schürmann F. Abdellah M, et al. Among authors: coggan js. Bioinformatics. 2021 Jul 12;37(Suppl_1):i426-i433. doi: 10.1093/bioinformatics/btab280. Bioinformatics. 2021. PMID: 34252950 Free PMC article.

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Norepinephrine stimulates glycogenolysis in astrocytes to fuel neurons with lactate.

Coggan JS, Keller D, Calì C, Lehväslaiho H, Markram H, Schürmann F, Magistretti PJ. Coggan JS, et al. PLoS Comput Biol. 2018 Aug 30;14(8):e1006392. doi: 10.1371/journal.pcbi.1006392. eCollection 2018 Aug. PLoS Comput Biol. 2018. PMID: 30161133 Free PMC article.

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Interactive visualization and analysis of morphological skeletons of brain vasculature networks with VessMorphoVis.

Abdellah M, Guerrero NR, Lapere S, Coggan JS, Keller D, Coste B, Dagar S, Courcol JD, Markram H, Schürmann F. Abdellah M, et al. Among authors: coggan js. Bioinformatics. 2020 Jul 1;36(Suppl_1):i534-i541. doi: 10.1093/bioinformatics/btaa461. Bioinformatics. 2020. PMID: 32657395 Free PMC article.

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Excitation states of metabolic networks predict dose-response fingerprinting and ligand pulse phase signalling.

Coggan JS, Keller D, Markram H, Schürmann F, Magistretti PJ. Coggan JS, et al. J Theor Biol. 2020 Feb 21;487:110123. doi: 10.1016/j.jtbi.2019.110123. Epub 2019 Dec 19. J Theor Biol. 2020. PMID: 31866398 Free article.

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Representing stimulus information in an energy metabolism pathway.

Coggan JS, Keller D, Markram H, Schürmann F, Magistretti PJ. Coggan JS, et al. J Theor Biol. 2022 May 7;540:111090. doi: 10.1016/j.jtbi.2022.111090. Epub 2022 Mar 7. J Theor Biol. 2022. PMID: 35271865 Free article.

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Proposed evolutionary changes in the role of myelin.

Stiefel KM, Torben-Nielsen B, Coggan JS. Stiefel KM, et al. Among authors: coggan js. Front Neurosci. 2013 Nov 8;7:202. doi: 10.3389/fnins.2013.00202. eCollection 2013. Front Neurosci. 2013. PMID: 24265603 Free PMC article.

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A Process for Digitizing and Simulating Biologically Realistic Oligocellular Networks Demonstrated for the Neuro-Glio-Vascular Ensemble.

Coggan JS, Calì C, Keller D, Agus M, Boges D, Abdellah M, Kare K, Lehväslaiho H, Eilemann S, Jolivet RB, Hadwiger M, Markram H, Schürmann F, Magistretti PJ. Coggan JS, et al. Front Neurosci. 2018 Sep 25;12:664. doi: 10.3389/fnins.2018.00664. eCollection 2018. Front Neurosci. 2018. PMID: 30319342 Free PMC article.

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