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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1998 1
2000 1
2001 1
2002 1
2004 2
2005 2
2006 3
2007 4
2008 2
2009 3
2010 3
2011 3
2012 4
2013 4
2014 3
2015 6
2016 6
2017 2
2018 6
2019 4
2020 3
2021 0
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60 results
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8 articles found by citation matching

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Page 1
Acetylation of Cytidine in mRNA Promotes Translation Efficiency.
Arango D, Sturgill D, Alhusaini N, Dillman AA, Sweet TJ, Hanson G, Hosogane M, Sinclair WR, Nanan KK, Mandler MD, Fox SD, Zengeya TT, Andresson T, Meier JL, Coller J, Oberdoerffer S. Arango D, et al. Among authors: coller j. Cell. 2018 Dec 13;175(7):1872-1886.e24. doi: 10.1016/j.cell.2018.10.030. Epub 2018 Nov 15. Cell. 2018. PMID: 30449621 Free PMC article.
Generation of the "epitranscriptome" through post-transcriptional ribonucleoside modification embeds a layer of regulatory complexity into RNA structure and function. Here, we describe N4-acetylcytidine (ac4C) as an mRNA modification that is catalyzed by the acetyltransfer …
Generation of the "epitranscriptome" through post-transcriptional ribonucleoside modification embeds a layer of regulatory complexity into …
Atheroprotective roles of smooth muscle cell phenotypic modulation and the TCF21 disease gene as revealed by single-cell analysis.
Wirka RC, Wagh D, Paik DT, Pjanic M, Nguyen T, Miller CL, Kundu R, Nagao M, Coller J, Koyano TK, Fong R, Woo YJ, Liu B, Montgomery SB, Wu JC, Zhu K, Chang R, Alamprese M, Tallquist MD, Kim JB, Quertermous T. Wirka RC, et al. Among authors: coller j. Nat Med. 2019 Aug;25(8):1280-1289. doi: 10.1038/s41591-019-0512-5. Epub 2019 Jul 29. Nat Med. 2019. PMID: 31359001 Free PMC article.
However, the phenotype of modulated SMCs in vivo during atherosclerosis and the influence of this process on coronary artery disease (CAD) risk have not been clearly established. Using single-cell RNA sequencing, we comprehensively characterized the transcriptomic phenotyp …
However, the phenotype of modulated SMCs in vivo during atherosclerosis and the influence of this process on coronary artery disease (CAD) r …
Codon optimality, bias and usage in translation and mRNA decay.
Hanson G, Coller J. Hanson G, et al. Among authors: coller j. Nat Rev Mol Cell Biol. 2018 Jan;19(1):20-30. doi: 10.1038/nrm.2017.91. Epub 2017 Oct 11. Nat Rev Mol Cell Biol. 2018. PMID: 29018283 Free PMC article. Review.
The Ccr4-Not complex monitors the translating ribosome for codon optimality.
Buschauer R, Matsuo Y, Sugiyama T, Chen YH, Alhusaini N, Sweet T, Ikeuchi K, Cheng J, Matsuki Y, Nobuta R, Gilmozzi A, Berninghausen O, Tesina P, Becker T, Coller J, Inada T, Beckmann R. Buschauer R, et al. Among authors: coller j. Science. 2020 Apr 17;368(6488):eaay6912. doi: 10.1126/science.aay6912. Science. 2020. PMID: 32299921
Control of messenger RNA (mRNA) decay rate is intimately connected to translation elongation, but the spatial coordination of these events is poorly understood. ...We used a combination of cryo-electron microscopy, ribosome profiling, and mRNA stability assays to examine t …
Control of messenger RNA (mRNA) decay rate is intimately connected to translation elongation, but the spatial coordination of these e …
Quantitative tRNA-sequencing uncovers metazoan tissue-specific tRNA regulation.
Pinkard O, McFarland S, Sweet T, Coller J. Pinkard O, et al. Among authors: coller j. Nat Commun. 2020 Aug 14;11(1):4104. doi: 10.1038/s41467-020-17879-x. Nat Commun. 2020. PMID: 32796835 Free PMC article.
While this decoding function is clear, an emerging theme is that tRNA abundance and functionality can powerfully impact protein production rate, folding, activity, and messenger RNA stability. Importantly, however, the expression pattern of tRNAs is obliquely known. Here w …
While this decoding function is clear, an emerging theme is that tRNA abundance and functionality can powerfully impact protein production r …
Codon optimality is a major determinant of mRNA stability.
Presnyak V, Alhusaini N, Chen YH, Martin S, Morris N, Kline N, Olson S, Weinberg D, Baker KE, Graveley BR, Coller J. Presnyak V, et al. Among authors: coller j. Cell. 2015 Mar 12;160(6):1111-24. doi: 10.1016/j.cell.2015.02.029. Cell. 2015. PMID: 25768907 Free PMC article.
We show that codon optimality is one feature that contributes greatly to mRNA stability. Genome-wide RNA decay analysis revealed that stable mRNAs are enriched in codons designated optimal, whereas unstable mRNAs contain predominately non-optimal codons. ...
We show that codon optimality is one feature that contributes greatly to mRNA stability. Genome-wide RNA decay analysis revealed that …
RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts.
Geisler S, Coller J. Geisler S, et al. Among authors: coller j. Nat Rev Mol Cell Biol. 2013 Nov;14(11):699-712. doi: 10.1038/nrm3679. Epub 2013 Oct 9. Nat Rev Mol Cell Biol. 2013. PMID: 24105322 Free PMC article. Review.
Early discoveries support a paradigm in which lncRNAs regulate transcription via chromatin modulation, but new functions are steadily emerging. Given the biochemical versatility of RNA, lncRNAs may be used for various tasks, including post-transcriptional regulation, organ …
Early discoveries support a paradigm in which lncRNAs regulate transcription via chromatin modulation, but new functions are steadily emergi …
tRNA Metabolism and Neurodevelopmental Disorders.
Schaffer AE, Pinkard O, Coller JM. Schaffer AE, et al. Among authors: coller jm. Annu Rev Genomics Hum Genet. 2019 Aug 31;20:359-387. doi: 10.1146/annurev-genom-083118-015334. Epub 2019 May 13. Annu Rev Genomics Hum Genet. 2019. PMID: 31082281 Free PMC article. Review.
Structural and molecular mechanisms for the control of eukaryotic 5'-3' mRNA decay.
Mugridge JS, Coller J, Gross JD. Mugridge JS, et al. Among authors: coller j. Nat Struct Mol Biol. 2018 Dec;25(12):1077-1085. doi: 10.1038/s41594-018-0164-z. Epub 2018 Dec 5. Nat Struct Mol Biol. 2018. PMID: 30518847 Review.
5'-3' RNA decay pathways are critical for quality control and regulation of gene expression. ...Here we review recent mechanistic insights into the control of 5'-3' RNA decay, including coupling between translation and decay, coordination between the complexes and a …
5'-3' RNA decay pathways are critical for quality control and regulation of gene expression. ...Here we review recent mechanistic ins …
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