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Chemical cross-linking and mass spectrometry for protein structural modeling.
Back JW, de Jong L, Muijsers AO, de Koster CG. Back JW, et al. Among authors: de jong l, de koster cg. J Mol Biol. 2003 Aug 8;331(2):303-13. doi: 10.1016/s0022-2836(03)00721-6. J Mol Biol. 2003. PMID: 12888339 Review.
In-Culture Cross-Linking of Bacterial Cells Reveals Large-Scale Dynamic Protein-Protein Interactions at the Peptide Level.
de Jong L, de Koning EA, Roseboom W, Buncherd H, Wanner MJ, Dapic I, Jansen PJ, van Maarseveen JH, Corthals GL, Lewis PJ, Hamoen LW, de Koster CG. de Jong L, et al. Among authors: de koning ea, de koster cg. J Proteome Res. 2017 Jul 7;16(7):2457-2471. doi: 10.1021/acs.jproteome.7b00068. Epub 2017 May 26. J Proteome Res. 2017. PMID: 28516784 Free PMC article.
Isolation of cross-linked peptides by diagonal strong cation exchange chromatography for protein complex topology studies by peptide fragment fingerprinting from large sequence databases.
Buncherd H, Roseboom W, Ghavim B, Du W, de Koning LJ, de Koster CG, de Jong L. Buncherd H, et al. Among authors: de koning lj, de koster cg, de jong l. J Chromatogr A. 2014 Jun 27;1348:34-46. doi: 10.1016/j.chroma.2014.04.083. Epub 2014 May 2. J Chromatogr A. 2014. PMID: 24819016
Identification of cross-linked peptides for protein interaction studies using mass spectrometry and 18O labeling.
Back JW, Notenboom V, de Koning LJ, Muijsers AO, Sixma TK, de Koster CG, de Jong L. Back JW, et al. Among authors: de koning lj, de koster cg, de jong l. Anal Chem. 2002 Sep 1;74(17):4417-22. doi: 10.1021/ac0257492. Anal Chem. 2002. PMID: 12236350
A structure for the yeast prohibitin complex: Structure prediction and evidence from chemical crosslinking and mass spectrometry.
Back JW, Sanz MA, De Jong L, De Koning LJ, Nijtmans LG, De Koster CG, Grivell LA, Van Der Spek H, Muijsers AO. Back JW, et al. Among authors: de jong l, de koning lj, de koster cg. Protein Sci. 2002 Oct;11(10):2471-8. doi: 10.1110/ps.0212602. Protein Sci. 2002. PMID: 12237468 Free PMC article.
The Soluble Periplasmic Domains of Escherichia coli Cell Division Proteins FtsQ/FtsB/FtsL Form a Trimeric Complex with Submicromolar Affinity.
Glas M, van den Berg van Saparoea HB, McLaughlin SH, Roseboom W, Liu F, Koningstein GM, Fish A, den Blaauwen T, Heck AJ, de Jong L, Bitter W, de Esch IJ, Luirink J. Glas M, et al. Among authors: de jong l, de esch ij. J Biol Chem. 2015 Aug 28;290(35):21498-509. doi: 10.1074/jbc.M115.654756. Epub 2015 Jul 9. J Biol Chem. 2015. PMID: 26160297 Free PMC article.
A gas phase cleavage reaction of cross-linked peptides for protein complex topology studies by peptide fragment fingerprinting from large sequence database.
Buncherd H, Roseboom W, de Koning LJ, de Koster CG, de Jong L. Buncherd H, et al. Among authors: de koning lj, de koster cg, de jong l. J Proteomics. 2014 Aug 28;108:65-77. doi: 10.1016/j.jprot.2014.05.003. Epub 2014 May 17. J Proteomics. 2014. PMID: 24840472
Selective enrichment of azide-containing peptides from complex mixtures.
Nessen MA, Kramer G, Back J, Baskin JM, Smeenk LE, de Koning LJ, van Maarseveen JH, de Jong L, Bertozzi CR, Hiemstra H, de Koster CG. Nessen MA, et al. Among authors: de koning lj, de jong l, de koster cg. J Proteome Res. 2009 Jul;8(7):3702-11. doi: 10.1021/pr900257z. J Proteome Res. 2009. PMID: 19402736 Free PMC article.
Identification and quantitation of newly synthesized proteins in Escherichia coli by enrichment of azidohomoalanine-labeled peptides with diagonal chromatography.
Kramer G, Sprenger RR, Back J, Dekker HL, Nessen MA, van Maarseveen JH, de Koning LJ, Hellingwerf KJ, de Jong L, de Koster CG. Kramer G, et al. Among authors: de koning lj, de jong l, de koster cg. Mol Cell Proteomics. 2009 Jul;8(7):1599-611. doi: 10.1074/mcp.M800392-MCP200. Epub 2009 Mar 25. Mol Cell Proteomics. 2009. PMID: 19321432 Free PMC article.
Mass spectrometric quantitation of covalently bound cell wall proteins in Saccharomyces cerevisiae.
Yin QY, de Groot PW, de Jong L, Klis FM, De Koster CG. Yin QY, et al. Among authors: de groot pw, de jong l, de koster cg. FEMS Yeast Res. 2007 Sep;7(6):887-96. doi: 10.1111/j.1567-1364.2007.00272.x. Epub 2007 Jul 6. FEMS Yeast Res. 2007. PMID: 17617218 Free PMC article.
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