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97 results
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Identifying network of drug mode of action by gene expression profiling.
Iorio F, Tagliaferri R, di Bernardo D. Iorio F, et al. Among authors: di bernardo d. J Comput Biol. 2009 Feb;16(2):241-51. doi: 10.1089/cmb.2008.10TT. J Comput Biol. 2009. PMID: 19183001
Inferring genetic networks and identifying compound mode of action via expression profiling.
Gardner TS, di Bernardo D, Lorenz D, Collins JJ. Gardner TS, et al. Among authors: di bernardo d. Science. 2003 Jul 4;301(5629):102-5. doi: 10.1126/science.1081900. Science. 2003. PMID: 12843395
ddbRNA: detection of conserved secondary structures in multiple alignments.
di Bernardo D, Down T, Hubbard T. di Bernardo D, et al. Bioinformatics. 2003 Sep 1;19(13):1606-11. doi: 10.1093/bioinformatics/btg229. Bioinformatics. 2003. PMID: 12967955
Robust identification of large genetic networks.
Di Bernardo D, Gardner TS, Collins JJ. Di Bernardo D, et al. Pac Symp Biocomput. 2004:486-97. doi: 10.1142/9789812704856_0046. Pac Symp Biocomput. 2004. PMID: 14992527
Chemogenomic profiling on a genome-wide scale using reverse-engineered gene networks.
di Bernardo D, Thompson MJ, Gardner TS, Chobot SE, Eastwood EL, Wojtovich AP, Elliott SJ, Schaus SE, Collins JJ. di Bernardo D, et al. Nat Biotechnol. 2005 Mar;23(3):377-83. doi: 10.1038/nbt1075. Nat Biotechnol. 2005. PMID: 15765094
A multi-step approach to time series analysis and gene expression clustering.
Amato R, Ciaramella A, Deniskina N, Del Mondo C, di Bernardo D, Donalek C, Longo G, Mangano G, Miele G, Raiconi G, Staiano A, Tagliaferri R. Amato R, et al. Among authors: di bernardo d. Bioinformatics. 2006 Mar 1;22(5):589-96. doi: 10.1093/bioinformatics/btk026. Epub 2006 Jan 5. Bioinformatics. 2006. PMID: 16397005
Inference of gene regulatory networks and compound mode of action from time course gene expression profiles.
Bansal M, Della Gatta G, di Bernardo D. Bansal M, et al. Among authors: di bernardo d. Bioinformatics. 2006 Apr 1;22(7):815-22. doi: 10.1093/bioinformatics/btl003. Epub 2006 Jan 17. Bioinformatics. 2006. PMID: 16418235
Computational framework for the prediction of transcription factor binding sites by multiple data integration.
Ambesi-Impiombato A, Bansal M, LiĆ² P, di Bernardo D. Ambesi-Impiombato A, et al. Among authors: di bernardo d. BMC Neurosci. 2006 Oct 30;7 Suppl 1(Suppl 1):S8. doi: 10.1186/1471-2202-7-S1-S8. BMC Neurosci. 2006. PMID: 17118162 Free PMC article. Review.
Discovering drug mode of action using reverse-engineered gene networks.
Bansal M, Della Gatta G, Wierzbowski J, Gardner T, di Bernardo D. Bansal M, et al. Among authors: di bernardo d. Conf Proc IEEE Eng Med Biol Soc. 2005;2005:4739-42. doi: 10.1109/IEMBS.2005.1615530. Conf Proc IEEE Eng Med Biol Soc. 2005. PMID: 17281300
How to infer gene networks from expression profiles.
Bansal M, Belcastro V, Ambesi-Impiombato A, di Bernardo D. Bansal M, et al. Among authors: di bernardo d. Mol Syst Biol. 2007;3:78. doi: 10.1038/msb4100120. Epub 2007 Feb 13. Mol Syst Biol. 2007. PMID: 17299415 Free PMC article.
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