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Discovering drug mode of action using reverse-engineered gene networks.
Bansal M, Della Gatta G, Wierzbowski J, Gardner T, di Bernardo D. Bansal M, et al. Conf Proc IEEE Eng Med Biol Soc. 2005;2005:4739-42. doi: 10.1109/IEMBS.2005.1615530. Conf Proc IEEE Eng Med Biol Soc. 2005. PMID: 17281300
How to infer gene networks from expression profiles.
Bansal M, Belcastro V, Ambesi-Impiombato A, di Bernardo D. Bansal M, et al. Mol Syst Biol. 2007;3:78. doi: 10.1038/msb4100120. Epub 2007 Feb 13. Mol Syst Biol. 2007. PMID: 17299415 Free PMC article.
Discovery of drug mode of action and drug repositioning from transcriptional responses.
Iorio F, Bosotti R, Scacheri E, Belcastro V, Mithbaokar P, Ferriero R, Murino L, Tagliaferri R, Brunetti-Pierri N, Isacchi A, di Bernardo D. Iorio F, et al. Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14621-6. doi: 10.1073/pnas.1000138107. Epub 2010 Aug 2. Proc Natl Acad Sci U S A. 2010. PMID: 20679242 Free PMC article.
Modeling RNA interference in mammalian cells.
Cuccato G, Polynikis A, Siciliano V, Graziano M, di Bernardo M, di Bernardo D. Cuccato G, et al. BMC Syst Biol. 2011 Jan 27;5:19. doi: 10.1186/1752-0509-5-19. BMC Syst Biol. 2011. PMID: 21272352 Free PMC article.
Predicting synthetic gene networks.
di Bernardo D, Marucci L, Menolascina F, Siciliano V. di Bernardo D, et al. Methods Mol Biol. 2012;813:57-81. doi: 10.1007/978-1-61779-412-4_4. Methods Mol Biol. 2012. PMID: 22083736 Free PMC article.
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