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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2000 1
2002 4
2003 18
2004 37
2005 52
2006 70
2007 40
2008 69
2009 76
2010 76
2011 72
2012 88
2013 92
2014 106
2015 148
2016 143
2017 176
2018 227
2019 255
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2023 291
2024 101

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2,895 results

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Page 1
TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations.
Tang H, Finn RD, Thomas PD. Tang H, et al. Bioinformatics. 2019 Feb 1;35(3):518-520. doi: 10.1093/bioinformatics/bty625. Bioinformatics. 2019. PMID: 30032202 Free PMC article.
SUMMARY: TreeGrafter is a new software tool for annotating protein sequences using pre-annotated phylogenetic trees. Currently, the tool provides annotations to Gene Ontology (GO) terms, and PANTHER family and subfamily. ...
SUMMARY: TreeGrafter is a new software tool for annotating protein sequences using pre-annotated phylogenetic trees. Currently, the …
GOTrapper: a tool to navigate through branches of gene ontology hierarchy.
Hassan H, Shanak S. Hassan H, et al. BMC Bioinformatics. 2019 Jan 11;20(1):20. doi: 10.1186/s12859-018-2581-8. BMC Bioinformatics. 2019. PMID: 30634902 Free PMC article.
BACKGROUND: Gene Ontology (GO) is a useful resource of controlled vocabulary that provides information about annotated genes. ...CONCLUSION: GOTrapper is a user-friendly Java tool that helps the user move up and down the ontology tree, which leads to n …
BACKGROUND: Gene Ontology (GO) is a useful resource of controlled vocabulary that provides information about annotated genes. …
Identification of Core Genes and Pathways in Melanoma Metastasis via Bioinformatics Analysis.
Xie R, Li B, Jia L, Li Y. Xie R, et al. Int J Mol Sci. 2022 Jan 12;23(2):794. doi: 10.3390/ijms23020794. Int J Mol Sci. 2022. PMID: 35054979 Free PMC article.
This study aimed to screen the core genes and molecular mechanisms related to melanoma metastasis. A gene expression profile, GSE8401, including 31 primary melanoma and 52 metastatic melanoma clinical samples, was downloaded from the Gene Expression Omnibus (GEO) da …
This study aimed to screen the core genes and molecular mechanisms related to melanoma metastasis. A gene expression profile, GSE8401 …
GOnet: a tool for interactive Gene Ontology analysis.
Pomaznoy M, Ha B, Peters B. Pomaznoy M, et al. BMC Bioinformatics. 2018 Dec 7;19(1):470. doi: 10.1186/s12859-018-2533-3. BMC Bioinformatics. 2018. PMID: 30526489 Free PMC article.
BACKGROUND: Biological interpretation of gene/protein lists resulting from -omics experiments can be a complex task. A common approach consists of reviewing Gene Ontology (GO) annotations for entries in such lists and searching for enrichment patterns. ...
BACKGROUND: Biological interpretation of gene/protein lists resulting from -omics experiments can be a complex task. A common approac …
GOcats: A tool for categorizing Gene Ontology into subgraphs of user-defined concepts.
Hinderer EW 3rd, Moseley HNB. Hinderer EW 3rd, et al. PLoS One. 2020 Jun 11;15(6):e0233311. doi: 10.1371/journal.pone.0233311. eCollection 2020. PLoS One. 2020. PMID: 32525872 Free PMC article.
Gene Ontology is used extensively in scientific knowledgebases and repositories to organize a wealth of biological information. ...To address these issues, we present GOcats, a novel tool that organizes the Gene Ontology (GO) into subgraphs repr …
Gene Ontology is used extensively in scientific knowledgebases and repositories to organize a wealth of biological information …
Gene Ontology-Based Analysis of Zebrafish Omics Data Using the Web Tool Comparative Gene Ontology.
Ebrahimie E, Fruzangohar M, Moussavi Nik SH, Newman M. Ebrahimie E, et al. Zebrafish. 2017 Oct;14(5):492-494. doi: 10.1089/zeb.2016.1290. Epub 2017 Sep 5. Zebrafish. 2017. PMID: 28873048
Gene Ontology (GO) analysis is a powerful tool in systems biology, which uses a defined nomenclature to annotate genes/proteins within three categories: "Molecular Function," "Biological Process," and "Cellular Component." ...We have now upgraded and elaborat …
Gene Ontology (GO) analysis is a powerful tool in systems biology, which uses a defined nomenclature to annotate genes/ …
Formalization of gene regulation knowledge using ontologies and gene ontology causal activity models.
Juanes Cortés B, Vera-Ramos JA, Lovering RC, Gaudet P, Laegreid A, Logie C, Schulz S, Roldán-García MDM, Kuiper M, Fernández-Breis JT. Juanes Cortés B, et al. Biochim Biophys Acta Gene Regul Mech. 2021 Nov-Dec;1864(11-12):194766. doi: 10.1016/j.bbagrm.2021.194766. Epub 2021 Oct 25. Biochim Biophys Acta Gene Regul Mech. 2021. PMID: 34710644 Free article.
The Gene Ontology has demonstrated that ontologies play a fundamental role in biological data interoperability and integration. ...The models have been implemented using Protege, a general ontology editor, and Noctua, the tool developed by the Gene …
The Gene Ontology has demonstrated that ontologies play a fundamental role in biological data interoperability and integration …
TS-GOEA: a web tool for tissue-specific gene set enrichment analysis based on gene ontology.
Peng J, Lu G, Xue H, Wang T, Shang X. Peng J, et al. BMC Bioinformatics. 2019 Nov 25;20(Suppl 18):572. doi: 10.1186/s12859-019-3125-6. BMC Bioinformatics. 2019. PMID: 31760951 Free PMC article.
BACKGROUND: The Gene Ontology (GO) knowledgebase is the world's largest source of information on the functions of genes. ...RESULTS: In this paper, we built an easy-to-use web tool called TS-GOEA that allows users to easily perform experiments based on tissue …
BACKGROUND: The Gene Ontology (GO) knowledgebase is the world's largest source of information on the functions of genes. ...RE …
Novel symmetry-based gene-gene dissimilarity measures utilizing Gene Ontology: Application in gene clustering.
Acharya S, Saha S, Pradhan P. Acharya S, et al. Gene. 2018 Dec 30;679:341-351. doi: 10.1016/j.gene.2018.08.062. Epub 2018 Sep 2. Gene. 2018. PMID: 30184472
During the analysis of such data often there is a need to further explore the similarity of genes not only with respect to their expression values but also with respect to their functional annotations, which can be obtained from Gene Ontology (GO) databases. In the …
During the analysis of such data often there is a need to further explore the similarity of genes not only with respect to their expression …
Gene Ontology Semantic Similarity Analysis Using GOSemSim.
Yu G. Yu G. Methods Mol Biol. 2020;2117:207-215. doi: 10.1007/978-1-0716-0301-7_11. Methods Mol Biol. 2020. PMID: 31960380
The GOSemSim package, an R-based tool within the Bioconductor project, offers several methods based on information content and graph structure for measuring semantic similarity among GO terms, gene products and gene clusters. ...
The GOSemSim package, an R-based tool within the Bioconductor project, offers several methods based on information content and graph …
2,895 results

Searches related to "gene ontology tool"