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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1988 1
2006 2
2007 9
2008 9
2009 17
2010 22
2011 29
2012 50
2013 42
2014 35
2015 60
2016 26
2017 29
2018 36
2019 46
2020 26
2021 1
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407 results
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Automating Installation of the Integrating Biology and the Bedside (i2b2) Platform.
Wagholikar KB, Mendis M, Dessai P, Sanz J, Law S, Gilson M, Sanders S, Vangala M, Bell DS, Murphy SN. Wagholikar KB, et al. Biomed Inform Insights. 2018 Jun 4;10:1178222618777749. doi: 10.1177/1178222618777749. eCollection 2018. Biomed Inform Insights. 2018. PMID: 29887730 Free PMC article. Review.
An i2b2 installation (called hive) comprises several i2b2 cells that provide different functionalities. ...To address this problem, we have created an automated installation package, called i2b2-quickstart, which automatically downloads the latest i2b2 …
An i2b2 installation (called hive) comprises several i2b2 cells that provide different functionalities. ...To address this pro …
i2b2 implemented over SMART-on-FHIR.
Paris N, Mendis M, Daniel C, Murphy S, Tannier X, Zweigenbaum P. Paris N, et al. AMIA Jt Summits Transl Sci Proc. 2018 May 18;2017:369-378. eCollection 2018. AMIA Jt Summits Transl Sci Proc. 2018. PMID: 29888095 Free PMC article.
Integrating Biology and the Bedside (i2b2) is the de-facto open-source medical tool for cohort discovery. ...Substitutable Modular third-party Applications (SMART) defines the SMART-on-FHIR specification on how applications shall interface with Electronic Health Records (E …
Integrating Biology and the Bedside (i2b2) is the de-facto open-source medical tool for cohort discovery. ...Substitutable Modular th …
Query Translation Between openEHR and i2b2.
Fette G, Kaspar M, Liman L, Dietrich G, Ertl M, Krebs J, Störk S, Puppe F. Fette G, et al. Stud Health Technol Inform. 2019;258:16-20. Stud Health Technol Inform. 2019. PMID: 30942705
The current work presents an approach to tackle both problems by translating queries from the DW system openEHR into queries from the DW system i2b2 and vice versa. For the subset of queries expressible in the query languages of both systems, the presented approach is well …
The current work presents an approach to tackle both problems by translating queries from the DW system openEHR into queries from the DW sys …
Metadata Import from RDF to i2b2.
Stöhr MR, Majeed RW, Günther A. Stöhr MR, et al. Stud Health Technol Inform. 2018;253:40-44. Stud Health Technol Inform. 2018. PMID: 30147037
The Resource Description Framework (RDF) is designed for highly interoperable ontology representation in various formats, facilitating ontology and metadata management. Our approach is to combine i2b2's and RDF's benefits by importing the easy-to-edit RDF ontology into the …
The Resource Description Framework (RDF) is designed for highly interoperable ontology representation in various formats, facilitating ontol …
SMART-on-FHIR implemented over i2b2.
Wagholikar KB, Mandel JC, Klann JG, Wattanasin N, Mendis M, Chute CG, Mandl KD, Murphy SN. Wagholikar KB, et al. J Am Med Inform Assoc. 2017 Mar 1;24(2):398-402. doi: 10.1093/jamia/ocw079. J Am Med Inform Assoc. 2017. PMID: 27274012 Free PMC article.
The source code is freely available as open source. We tested the cell by accessing resources from a test i2b2 installation, demonstrating that a SMART app can be launched from the cell that accesses patient data stored in i2b2. ...Further, it transforms i2b2 …
The source code is freely available as open source. We tested the cell by accessing resources from a test i2b2 installation, demonstr …
Integrating Multimodal Radiation Therapy Data into i2b2.
Zapletal E, Bibault JE, Giraud P, Burgun A. Zapletal E, et al. Appl Clin Inform. 2018 Apr;9(2):377-390. doi: 10.1055/s-0038-1651497. Epub 2018 May 30. Appl Clin Inform. 2018. PMID: 29847842 Free PMC article.
However, to design predictive models and assist in personalized treatment planning in cancer or radiation oncology, all available patient data need to be integrated into i2b2, including radiation therapy data that are currently not addressed in many existing i2b2 si …
However, to design predictive models and assist in personalized treatment planning in cancer or radiation oncology, all available patient da …
Building an I2B2-Based Population Repository for Clinical Research.
González L, Pérez-Rey D, Alonso E, Hernández G, Serrano P, Pedrera M, Gómez A, De Schepper K, Crepain T, Claerhout B. González L, et al. Stud Health Technol Inform. 2020 Jun 16;270:78-82. doi: 10.3233/SHTI200126. Stud Health Technol Inform. 2020. PMID: 32570350
Implementation of informatics for integrating biology and the bedside (i2b2) platform as Docker containers.
Wagholikar KB, Dessai P, Sanz J, Mendis ME, Bell DS, Murphy SN. Wagholikar KB, et al. BMC Med Inform Decis Mak. 2018 Jul 16;18(1):66. doi: 10.1186/s12911-018-0646-2. BMC Med Inform Decis Mak. 2018. PMID: 30012140 Free PMC article.
The i2b2 platform has several components with numerous dependencies and configuration parameters, which renders the task of installing or upgrading i2b2 a challenging one. ...By releasing i2b2 as a Docker container, we anticipate that users will be able to cr …
The i2b2 platform has several components with numerous dependencies and configuration parameters, which renders the task of installin …
Web services for data warehouses: OMOP and PCORnet on i2b2.
Klann JG, Phillips LC, Herrick C, Joss MAH, Wagholikar KB, Murphy SN. Klann JG, et al. J Am Med Inform Assoc. 2018 Oct 1;25(10):1331-1338. doi: 10.1093/jamia/ocy093. J Am Med Inform Assoc. 2018. PMID: 30085008 Free PMC article.
MATERIALS AND METHODS: We develop methodology for extending i2b2's pre-existing API to query additional data models, using i2b2's recent "multi-fact-table querying" feature. ...CONCLUSION: This methodology immediately allows querying OMOP and PCORnet using the i2 …
MATERIALS AND METHODS: We develop methodology for extending i2b2's pre-existing API to query additional data models, using i2b2 …
Enhancing the Representational Power of i2b2 through Referent Tracking.
Blaisure JC, Ceusters WM. Blaisure JC, et al. AMIA Annu Symp Proc. 2018 Dec 5;2018:262-271. eCollection 2018. AMIA Annu Symp Proc. 2018. PMID: 30815064 Free PMC article.
An unanswered question thus far is whether i2b2 search criteria could include characteristics of assertions themselves, e.g. diagnoses, rather than what the assertions (observations) are about, e.g. diseases. ...While this approach adheres to i2b2's base functionali …
An unanswered question thus far is whether i2b2 search criteria could include characteristics of assertions themselves, e.g. diagnose …
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