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2020 68
2021 144
2022 1
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Analytical validity of nanopore sequencing for rapid SARS-CoV-2 genome analysis.
Bull RA, Adikari TN, Ferguson JM, Hammond JM, Stevanovski I, Beukers AG, Naing Z, Yeang M, Verich A, Gamaarachchi H, Kim KW, Luciani F, Stelzer-Braid S, Eden JS, Rawlinson WD, van Hal SJ, Deveson IW. Bull RA, et al. Nat Commun. 2020 Dec 9;11(1):6272. doi: 10.1038/s41467-020-20075-6. Nat Commun. 2020. PMID: 33298935 Free PMC article.
Viral whole-genome sequencing (WGS) provides critical insight into the transmission and evolution of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). ...However, adoption of ONT sequencing for SARS-CoV
Viral whole-genome sequencing (WGS) provides critical insight into the transmission and evolution of Severe Acute Respi …
Virus Isolation from the First Patient with SARS-CoV-2 in Korea.
Park WB, Kwon NJ, Choi SJ, Kang CK, Choe PG, Kim JY, Yun J, Lee GW, Seong MW, Kim NJ, Seo JS, Oh MD. Park WB, et al. J Korean Med Sci. 2020 Feb 24;35(7):e84. doi: 10.3346/jkms.2020.35.e84. J Korean Med Sci. 2020. PMID: 32080990 Free PMC article.
Novel coronavirus (SARS-CoV-2) is found to cause a large outbreak started from Wuhan since December 2019 in China and SARS-CoV-2 infections have been reported with epidemiological linkage to China in 25 countries until now. We isolated
Novel coronavirus (SARS-CoV-2) is found to cause a large outbreak started from Wuhan since December 2019 in China and …
[Analysis of variation and evolution of SARS-CoV-2 genome].
Zhou Y, Zhang S, Chen J, Wan C, Zhao W, Zhang B. Zhou Y, et al. Nan Fang Yi Ke Da Xue Xue Bao. 2020 Feb 29;40(2):152-158. doi: 10.12122/j.issn.1673-4254.2020.02.02. Nan Fang Yi Ke Da Xue Xue Bao. 2020. PMID: 32376535 Free PMC article. Chinese.
OBJECTIVE: To analyze the evolution and variation of SARS-CoV-2 during the epidemic starting at the end of 2019. METHODS: We downloaded the full-length genome sequence of SARS-CoV-2 from the databases of GISAID and NCBI. ...The maj …
OBJECTIVE: To analyze the evolution and variation of SARS-CoV-2 during the epidemic starting at the end of 2019. METHOD …
Isolation and rapid sharing of the 2019 novel coronavirus (SARS-CoV-2) from the first patient diagnosed with COVID-19 in Australia.
Caly L, Druce J, Roberts J, Bond K, Tran T, Kostecki R, Yoga Y, Naughton W, Taiaroa G, Seemann T, Schultz MB, Howden BP, Korman TM, Lewin SR, Williamson DA, Catton MG. Caly L, et al. Med J Aust. 2020 Jun;212(10):459-462. doi: 10.5694/mja2.50569. Epub 2020 Apr 1. Med J Aust. 2020. PMID: 32237278 Free PMC article.
OBJECTIVES: To describe the first isolation and sequencing of SARS-CoV-2 in Australia and rapid sharing of the isolate. ...MAJOR OUTCOMES: Clinical course and laboratory features of the first reported case of COVID-19 (the illness caused …
OBJECTIVES: To describe the first isolation and sequencing of SARS-CoV-2 in Australia and rapid sharing o …
Transmission of SARS-CoV-2 on mink farms between humans and mink and back to humans.
Oude Munnink BB, Sikkema RS, Nieuwenhuijse DF, Molenaar RJ, Munger E, Molenkamp R, van der Spek A, Tolsma P, Rietveld A, Brouwer M, Bouwmeester-Vincken N, Harders F, Hakze-van der Honing R, Wegdam-Blans MCA, Bouwstra RJ, GeurtsvanKessel C, van der Eijk AA, Velkers FC, Smit LAM, Stegeman A, van der Poel WHM, Koopmans MPG. Oude Munnink BB, et al. Science. 2021 Jan 8;371(6525):172-177. doi: 10.1126/science.abe5901. Epub 2020 Nov 10. Science. 2021. PMID: 33172935 Free PMC article.
Animal experiments have shown that nonhuman primates, cats, ferrets, hamsters, rabbits, and bats can be infected by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). In addition, SARS-CoV-2 RNA has been detected in feli …
Animal experiments have shown that nonhuman primates, cats, ferrets, hamsters, rabbits, and bats can be infected by severe acute respiratory …
Temporal profiles of viral load in posterior oropharyngeal saliva samples and serum antibody responses during infection by SARS-CoV-2: an observational cohort study.
To KK, Tsang OT, Leung WS, Tam AR, Wu TC, Lung DC, Yip CC, Cai JP, Chan JM, Chik TS, Lau DP, Choi CY, Chen LL, Chan WM, Chan KH, Ip JD, Ng AC, Poon RW, Luo CT, Cheng VC, Chan JF, Hung IF, Chen Z, Chen H, Yuen KY. To KK, et al. Lancet Infect Dis. 2020 May;20(5):565-574. doi: 10.1016/S1473-3099(20)30196-1. Epub 2020 Mar 23. Lancet Infect Dis. 2020. PMID: 32213337 Free PMC article.
Whole-genome sequencing was done to identify possible mutations arising during infection. ...Anti-SARS-CoV-2-NP or anti-SARS-CoV-2-RBD IgG levels correlated with virus neutralisation titre (R(2)>09). ...
Whole-genome sequencing was done to identify possible mutations arising during infection. ...Anti-SARS-CoV
A Comparison of Whole Genome Sequencing of SARS-CoV-2 Using Amplicon-Based Sequencing, Random Hexamers, and Bait Capture.
Nasir JA, Kozak RA, Aftanas P, Raphenya AR, Smith KM, Maguire F, Maan H, Alruwaili M, Banerjee A, Mbareche H, Alcock BP, Knox NC, Mossman K, Wang B, Hiscox JA, McArthur AG, Mubareka S. Nasir JA, et al. Viruses. 2020 Aug 15;12(8):895. doi: 10.3390/v12080895. Viruses. 2020. PMID: 32824272 Free PMC article.
Genome sequencing of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is increasingly important to monitor the transmission and adaptive evolution of the virus. ...Liverpool amplification provided a more even read coverage of
Genome sequencing of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is increasingly
Whole genome and phylogenetic analysis of two SARS-CoV-2 strains isolated in Italy in January and February 2020: additional clues on multiple introductions and further circulation in Europe.
Stefanelli P, Faggioni G, Lo Presti A, Fiore S, Marchi A, Benedetti E, Fabiani C, Anselmo A, Ciammaruconi A, Fortunato A, De Santis R, Fillo S, Capobianchi MR, Gismondo MR, Ciervo A, Rezza G, Castrucci MR, Lista F, On Behalf Of Iss Covid-Study Group. Stefanelli P, et al. Euro Surveill. 2020 Apr;25(13):2000305. doi: 10.2807/1560-7917.ES.2020.25.13.2000305. Euro Surveill. 2020. PMID: 32265007 Free PMC article.
Whole genome sequences of SARS-CoV-2 obtained from two patients, a Chinese tourist visiting Rome and an Italian, were compared with sequences from Europe and elsewhere. ...Some additional European sequences in the tree segregated outside the two
Whole genome sequences of SARS-CoV-2 obtained from two patients, a Chinese tourist visiting Rome and an I
Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples.
Xiao M, Liu X, Ji J, Li M, Li J, Yang L, Sun W, Ren P, Yang G, Zhao J, Liang T, Ren H, Chen T, Zhong H, Song W, Wang Y, Deng Z, Zhao Y, Ou Z, Wang D, Cai J, Cheng X, Feng T, Wu H, Gong Y, Yang H, Wang J, Xu X, Zhu S, Chen F, Zhang Y, Chen W, Li Y, Li J. Xiao M, et al. Genome Med. 2020 Jun 30;12(1):57. doi: 10.1186/s13073-020-00751-4. Genome Med. 2020. PMID: 32605661 Free PMC article.
Taken all factors above and cost-effectiveness into consideration, we proposed guidance for how to choose sequencing strategy for SARS-CoV-2 under different situations. CONCLUSIONS: This is, to the best of our knowledge, the first work systematically i …
Taken all factors above and cost-effectiveness into consideration, we proposed guidance for how to choose sequencing strategy for …
Characterizations of SARS-CoV-2 mutational profile, spike protein stability and viral transmission.
Laha S, Chakraborty J, Das S, Manna SK, Biswas S, Chatterjee R. Laha S, et al. Infect Genet Evol. 2020 Nov;85:104445. doi: 10.1016/j.meegid.2020.104445. Epub 2020 Jun 30. Infect Genet Evol. 2020. PMID: 32615316 Free PMC article.
The SARS-CoV-2 genome has the capability of gaining rapid mutations as the virus spreads. ...The advantage of an increasing amount of whole-genome sequence data of SARS-CoV-2 intrigued us to explore the mutation profi …
The SARS-CoV-2 genome has the capability of gaining rapid mutations as the virus spreads. ...The advantage of an …
205 results