nima aghaeepour - Search Results

Year	Number of Results
2011	1
2012	5
2013	6
2014	4
2015	7
2016	6
2017	7
2018	7
2019	10
2020	18
2021	24
2022	20
2023	32
2024	39
2025	41
2026	20

1

Hypermobility and chronic pain in adolescents: diverging functional and neural profiles without sensory differences.

Huft K, Gaydos EF, White JN, Pascual-Diaz S, Schubert-Hjalmarsson E, Harrison N, Moua L, Hoeppli ME, Biggs E, Stinson JN, Aghaeepour N, Angst MS, Gaudilliere B, Coghill RC, Moayedi M, López-Solá M, King CD, Simons LE. Huft K, et al. Among authors: aghaeepour n. Pain. 2026 May 15. doi: 10.1097/j.pain.0000000000003999. Online ahead of print. Pain. 2026. PMID: 42187063

2

Analysis of factors driving variations in neonatal parenteral nutrition over a decade: A retrospective study.

Phongpreecha T, Sin LWY, Gaskari S, Aghaeepour N. Phongpreecha T, et al. Among authors: aghaeepour n. Nutr Clin Pract. 2026 May 10. doi: 10.1002/ncp.70134. Online ahead of print. Nutr Clin Pract. 2026. PMID: 42106975

3

AI Guided Parenteral Nutrition Therapy After Hematopoietic Stem Cell Transplantation.

El Ariss AB, Phongpreecha T, Ghanem M, Kimari M, James T, Freche E, Kerner JA, Gaudillière B, Angst MS, Gaskari S, Stevenson DK, Smith M, Aghaeepour N. El Ariss AB, et al. Among authors: aghaeepour n. NPJ Digit Med. 2026 May 6. doi: 10.1038/s41746-026-02652-z. Online ahead of print. NPJ Digit Med. 2026. PMID: 42092179 Free article.

4

Multiomics characterization of acute child illness and mortality in Africa and South Asia.

Espinosa CA, Njunge JM, Tickell KD, Diallo AH, Sayeem Bin Shahid ASM, Gazi MA, Kazi Z, Yoshioka E, Tigoi C, Mburu M, Ngari M, Ngao N, Omer E, Gumbi W, Gichuki BM, Mitchel A, Williams J, Gogain J, Janjic N, Mandal R, Jenkins B, Browne HP, Shao Y, Rozday T, Stares MD, Dawson NJR, Berson E, Chang A, Kim Y, Mataraso SJ, Shu CH, Phongpreecha T, Xue L, Saleem A, Singa B, Ahmed T, Voskuijl WP, Wishart DS, Houpt ER, Liu J, Ali A, Mupere E, Chisti MJ, Bandsma RHJ, Lawley TD, Koulman A, Lancioni CL, Aghaeepour N, Berkley JA, Walson JL; Childhood Acute Illness and Nutrition (CHAIN) Network. Espinosa CA, et al. Among authors: aghaeepour n. Nat Commun. 2026 Apr 13. doi: 10.1038/s41467-026-69754-w. Online ahead of print. Nat Commun. 2026. PMID: 41974697 Free article.

5

Targeted Real-Time Assessment of Chronic Pain (TRAC-Pain) in Youth: Protocol for a Digital Biosignature Development Through a Prospective Observational Cohort Study.

Bailes AH, Shu CH, Chang A, Masood S, Jehl N, Davis A, Giberson J, Cashman C, Hill A, Gill J, McGinnis RS, McGinnis EW, Aghaeepour N, Simons LE. Bailes AH, et al. Among authors: aghaeepour n. JMIR Res Protoc. 2026 Apr 6;15:e84781. doi: 10.2196/84781. JMIR Res Protoc. 2026. PMID: 41942112 Free PMC article.

6

Estimating time since influenza virus exposure using single-cell proteomic data.

Rizzo Nervo K, Hajiakhoond Bidoki N, Chen H, Rahil Z, Bjornson Z, Kim K, Bock B, Affrime M, Bauerle L, Huynh PBT, Liebowitz D, Tucker S, Gherardini PF, Nolan GP, Aghaeepour N, McIlwain DR. Rizzo Nervo K, et al. Among authors: aghaeepour n. Front Immunol. 2026 Mar 19;17:1787198. doi: 10.3389/fimmu.2026.1787198. eCollection 2026. Front Immunol. 2026. PMID: 41939909 Free PMC article.

7

Multi-Omics for Mothers and Infants (MOMI) Consortium: a global initiative to study adverse pregnancy outcomes.

Tang X, Ahmed S, Ahmed FB, Albrecht V, Brennsteiner V, Chang AL, Chowdhury NH, Deb S, Gormley M, Hasan T, Kamulaza L, Khalid J, Khan W, Khanam R, Kshetrapal P, Luo H, Maiti TK, Maitra A, Mannan MM, Mueller-Reif J, Mulenga C, Nisar I, Pervin J, Pokaprakarn T, Price J, Qazi MF, Rittenhouse K, Sebastiao Y, Sindano N, Sinha T, Sopory S, Steger M, Thiruvengadam R, Wadhwa N, Xue L, Aghaeepour N, Baqui AH, Bhatnagar S, Fisher S, Fox M, Hampel D, Kasaro M, Mann M, Rahman A, Sazawal S, Shenhav L, Stringer JS, Zhang G, Jehan F, De Paris K. Tang X, et al. Among authors: aghaeepour n. J Glob Health. 2026 Apr 3;16:05002. doi: 10.7189/jogh.16.05002. J Glob Health. 2026. PMID: 41926172 Free PMC article.

8

Multimodal AI fuses proteomic and EHR data for rational prioritization of protein biomarkers in diabetic retinopathy.

Lin JB, Mataraso SJ, Chadha M, Velez G, Mruthyunjaya P, Aghaeepour N, Mahajan VB. Lin JB, et al. Among authors: aghaeepour n. medRxiv [Preprint]. 2026 Feb 24:2026.02.23.26346903. doi: 10.64898/2026.02.23.26346903. medRxiv. 2026. PMID: 41918763 Free PMC article. Preprint.

9

Blood-brain barrier dysfunction predicts cognitive trajectory after ischemic stroke.

Xue L, Jones OA, Drag L, Zera KA, Zhu L, Mlynash M, Carmichael NS, Shu CH, Biesiada Z, Seong D, Thomas OM, Simmons EC, Huang E, Berry K, Chung P, Aslan A, Xu R, Rutledge JE, Oh HS, Yang LK, James T, Ghanem M, Moran-Losada P, Poston KL, Henderson VW, Grainger J, Allan SM, Lansberg M, Mormino EC, Wyss-Coray T, Kapasi A, Schneider J, Smith CJ, Parkes LM, Aghaeepour N, Buckwalter MS. Xue L, et al. Among authors: aghaeepour n. bioRxiv [Preprint]. 2026 Mar 2:2026.02.27.708013. doi: 10.64898/2026.02.27.708013. bioRxiv. 2026. PMID: 41867710 Free PMC article. Preprint.

10

Erratum: Placental epigenetic clocks derived from crowdsourcing: Implications for the study of accelerated aging in obstetrics.

Bhatti G, Sufriyana H, Romero R, Patel T, Tekola-Ayele F, Alsaggaf I, Gomez-Lopez N, Su ECY, Done B, Hoffmann S, van Bömmel A, Wan C, Albrecht J, Novak C; DREAM Placenta Clock Challenge Consortium; Chaiworapongsa T, Sirota M, Aghaeepour N, Stolovitzky G, Bryant DR, Tarca AL. Bhatti G, et al. Among authors: aghaeepour n. iScience. 2026 Feb 18;29(3):115063. doi: 10.1016/j.isci.2026.115063. eCollection 2026 Mar 20. iScience. 2026. PMID: 41736858 Free PMC article.

11

Systemic immune dysregulation in hypertensive disorders of pregnancy persists years after delivery.

Sabayev M, Ganio EA, Stelzer IA, Sato M, Cambriel A, Bonham TA, Juvan ZN, Diop M, Iyer P, Sedan O, Aghaeepour N, Angst MS, Shaw GM, Stevenson DK, Stefanick ML, Boyd HA, Melbye M, Hlatky MA, Winn VD, Gaudilliere B, Feyaerts D. Sabayev M, et al. Among authors: aghaeepour n. Front Immunol. 2026 Feb 5;17:1716809. doi: 10.3389/fimmu.2026.1716809. eCollection 2026. Front Immunol. 2026. PMID: 41727432 Free PMC article.

12

A machine learning model for frailty based on wearable device measurements.

Culos A, Manas A, Shidara K, Fallazadeh R, Garcia-Garcia FJ, Losa-Reyna J, Alegre LM, Rodriguez-Manas L, Chang AL, Espinosa C, De Francesco D, Phongpreecha T, Becker M, Xenochristou M, Ravindra NG, Gaudilliere B, Angst MS, Ara I, Aghaeepour N. Culos A, et al. Among authors: aghaeepour n. Commun Med (Lond). 2026 Feb 19;6(1):173. doi: 10.1038/s43856-026-01419-7. Commun Med (Lond). 2026. PMID: 41714788 Free PMC article.

13

Leveraging health records to identify diagnoses associated with recurrent pregnancy loss across two medical centers.

Roger J, Xie F, Costello JM, Tang AS, Liu J, Oskotsky TT, Woldemariam SR, Kosti I, Le BL, Snyder MP, Giudice LC, Shaw GM, Stevenson DK, Rajkovic A, Glymour MM, Torgerson D, Aghaeepour N, Cakmak H, Lathi RB, Sirota M. Roger J, et al. Among authors: aghaeepour n. iScience. 2026 Jan 7;29(2):114633. doi: 10.1016/j.isci.2026.114633. eCollection 2026 Feb 20. iScience. 2026. PMID: 41660242 Free PMC article.

14

Early gestational prediction of spontaneous preterm birth using a validated three-protein serum biomarker panel.

Luo Q, Wei J, Ding Y, Chen Y, Wu L, Chou CJ, Luo X, Ghafourian N, Tao J, Jin B, Su KJ, Mortensen RD, Schilling J, Han Z, Ozawa N, Ichikawa T, Luo RY, Sylvester KG, Ceresnak SR, Wong RJ, Tian L, Marić I, Aghaeepour N, Gaudilliere B, Angst MS, Shaw GM, McElhinney D, Cohen HJ, Darmstadt GL, Niu J, Stevenson DK, Ling XB. Luo Q, et al. Among authors: aghaeepour n. BMC Med. 2026 Feb 2;24(1):138. doi: 10.1186/s12916-026-04639-9. BMC Med. 2026. PMID: 41629900 Free PMC article.

15

An encyclopedia of the cord blood metabolome reveals maternal-fetal interactions and disease risk.

Lancaster S, Mataraso S, Reiss JD, Contrepois K, Trowbridge CA, Michael B, Simms I, Ellenberger M, Gibson M, Clary M, McGuire L, Wong F, Canfield E, Cotter D, Wang T, Yang Y, Nair R, Krishnan P, Rangan PV, Bianco YK, Bernstein JA, Stevenson DK, Cowan T, Rangan E, Aghaeepour N, Kasowski M, Sylvester KG, Snyder MP. Lancaster S, et al. Among authors: aghaeepour n. Cell Rep Med. 2026 Feb 17;7(2):102548. doi: 10.1016/j.xcrm.2025.102548. Epub 2026 Jan 26. Cell Rep Med. 2026. PMID: 41592564 Free PMC article.

16

Quantitative assessment of neonatal health using dried blood spot metabolite profiles and deep learning.

Chang AL, Reiss JD, Culos A, Becker M, Mayo JA, Marić I, De Francesco D, Phongpreecha T, Espinosa CA, Mataraso SJ, Berson E, Kim Y, Xue L, Xie F, Shu CH, Fallahzadeh R, Bidoki NH, Xenochristou M, Zhang M, Profit J, Lee HC, Gaudillière B, Angst MS, Hawken S, Wilson K, Stevenson DK, Shaw GM, Sylvester KG, Aghaeepour N. Chang AL, et al. Among authors: aghaeepour n. Sci Transl Med. 2026 Jan 21;18(833):eadv4942. doi: 10.1126/scitranslmed.adv4942. Epub 2026 Jan 21. Sci Transl Med. 2026. PMID: 41564154 Free PMC article.

17

Holistic evaluation of large language models for medical tasks with MedHELM.

Bedi S, Cui H, Fuentes M, Unell A, Wornow M, Banda JM, Kotecha N, Keyes T, Mai Y, Oez M, Qiu H, Jain S, Schettini L, Kashyap M, Fries JA, Swaminathan A, Chung P, Haredasht FN, Lopez I, Aali A, Tse G, Nayak A, Vedak S, Jain SS, Patel B, Fayanju O, Shah S, Goh E, Yao DH, Soetikno B, Reis E, Gatidis S, Divi V, Capasso R, Saralkar R, Chiang CC, Jindal J, Pham T, Ghoddusi F, Lin S, Chiou AS, Hong HJ, Roy M, Gensheimer MF, Patel H, Schulman K, Dash D, Char D, Downing L, Grolleau F, Black K, Mieso B, Zahedivash A, Yim WW, Sharma H, Lee T, Kirsch H, Lee J, Ambers N, Lugtu C, Sharma A, Mawji B, Alekseyev A, Zhou V, Kakkar V, Helzer J, Revri A, Bannett Y, Daneshjou R, Chen J, Alsentzer E, Morse K, Ravi N, Aghaeepour N, Kennedy V, Chaudhari A, Wang T, Koyejo S, Lungren MP, Horvitz E, Liang P, Pfeffer MA, Shah NH. Bedi S, et al. Among authors: aghaeepour n. Nat Med. 2026 Mar;32(3):943-951. doi: 10.1038/s41591-025-04151-2. Epub 2026 Jan 20. Nat Med. 2026. PMID: 41559415

18

Brain-immune correlates of quality of life in adolescents with chronic musculoskeletal pain.

Pascual-Diaz S, Suñol M, Hoeppli ME, Biggs E, King CD, Aghaeepour N, Angst MS, Ganio E, Cambriel A, Feyaerts D, Gaudilliere B, Stinson JN, Moayedi M, Coghill RC, Simons LE, López-Solà M. Pascual-Diaz S, et al. Among authors: aghaeepour n. Brain Behav Immun. 2026 Feb;132:106225. doi: 10.1016/j.bbi.2025.106225. Epub 2025 Dec 18. Brain Behav Immun. 2026. PMID: 41421736 Free article.

19

Development and validation of a pre-trained language model for neonatal morbidities: a retrospective, multicentre, prognostic study.

Xie F, Chung P, Reiss JD, Tjoa E, De Francesco D, Phongpreecha T, Haberkorn W, Chakraborty D, Chang AL, James T, Kim Y, Mataraso S, Espinosa C, Yang L, Shu CH, Xue L, Berson E, Mohammadi N, Shome S, Reincke SM, Ghanem M, Maric I, Gaudilliere B, Angst MS, Sylvester K, Shaw GM, Prince LS, Stevenson DK, Aghaeepour N. Xie F, et al. Among authors: aghaeepour n. Lancet Digit Health. 2025 Dec;7(12):100926. doi: 10.1016/j.landig.2025.100926. Epub 2025 Dec 18. Lancet Digit Health. 2025. PMID: 41419365 Free PMC article.

20

Prenatal wildfire smoke, first trimester proteome, and subsequent child behavioral outcomes: An exploratory study.

Buthmann JL, Aghaeepour N, Burke M, Maric I, Stevenson DK, Shaw GM, Gotlib IH. Buthmann JL, et al. Among authors: aghaeepour n. Environ Res. 2026 Feb 15;291:123577. doi: 10.1016/j.envres.2025.123577. Epub 2025 Dec 16. Environ Res. 2026. PMID: 41412360

21

Systemic immune dysregulation in hypertensive disorders of pregnancy persists years after delivery.

Sabayev M, Ganio EA, Stelzer IA, Sato M, Cambriel A, Bonham TA, Juvan ZN, Diop M, Iyer P, Sedan O, Aghaeepour N, Angst MS, Shaw GM, Stevenson DK, Stefanick ML, Boyd HA, Melbye M, Hlatky MA, Winn VD, Gaudilliere B, Feyaerts D. Sabayev M, et al. Among authors: aghaeepour n. bioRxiv [Preprint]. 2025 Nov 28:2025.11.25.690209. doi: 10.1101/2025.11.25.690209. bioRxiv. 2025. Update in: Front Immunol. 2026 Feb 05;17:1716809. doi: 10.3389/fimmu.2026.1716809. PMID: 41394562 Free PMC article. Updated. Preprint.

22

AI learning for pediatric right ventricular assessment: development and validation across multiple centers.

Reddy C, Yan Y, Qiu M, Tang Y, Jin B, Han Z, Li Y, Zhou S, Tang Q, Xiao H, Yang S, Wen Q, Wu LP, Fu LJ, Jing ZY, Yang YJ, Zhang YQ, Ozawa N, Ichikawa T, Ling E, Wong RJ, Aghaeepour N, Gaudilliere B, Angst MS, Sylvester KG, Cohen HJ, Darmstadt GL, Chubb H, Ceresnak S, Tandon A, McElhinney DB, Tierney S, Zhang H, Ling XB. Reddy C, et al. Among authors: aghaeepour n. NPJ Digit Med. 2025 Dec 9;8(1):752. doi: 10.1038/s41746-025-02123-x. NPJ Digit Med. 2025. PMID: 41366000 Free PMC article.

23

Artificial intelligence-guided nutritional therapy in the ICU.

Peng D, Phongpreecha T, Aghaeepour N. Peng D, et al. Among authors: aghaeepour n. Curr Opin Clin Nutr Metab Care. 2026 Mar 1;29(2):193-201. doi: 10.1097/MCO.0000000000001189. Epub 2025 Nov 24. Curr Opin Clin Nutr Metab Care. 2026. PMID: 41285167 Free PMC article. Review.

24

Single-cell-level digital twins for preterm birth prevention strategies.

Einhaus J, Neidlinger P, Fondeur O, Sato M, Anronikov A, Miyazaki K, Amar JN, Ando K, Badea V, Gaudilliere DK, Sabayev M, Feyaerts D, Diop M, Tsai AS, Cambriel A, Ganio EA, Lagarde R, O'Kelly E, Stelzer IA, Hedou J, Wong RJ, Blumenfeld YJ, Lyell DJ, Shaw GM, Oskotsky TT, Sirota M, Giudice L, Stevenson DK, Aghaeepour N, Gaudilliere B. Einhaus J, et al. Among authors: aghaeepour n. bioRxiv [Preprint]. 2025 Oct 1:2025.09.29.679252. doi: 10.1101/2025.09.29.679252. bioRxiv. 2025. PMID: 41256687 Free PMC article. Preprint.

25

Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research.

Golob JL, Oskotsky TT, Tang AS, Roldan A, Chung V, Ha CWY, Wong RJ, Flynn KJ, Chai R, Dubin C, Parraga-Leo A, Wibrand C, Minot SS, Oskotsky B, Andreoletti G, Kosti I, Bletz J, Nelson A, Gao J, Wei Z, Chen G, Tang ZZ, Novielli P, Romano D, Pantaleo E, Amoroso N, Monaco A, Vacca M, De Angelis M, Bellotti R, Tangaro S, Wang Z, Yao J, Goel A, Mao J, Wang H, Zhang Y, Tewari A, Kuntzleman A, Bigcraft I, Techtmann S, Bae D, Kim E, Jeon J, Joe S; Preterm Birth DREAM Community; Theis KR, Ng S, Lee YS, Diaz-Gimeno P, Bennett PR, MacIntyre DA, Stolovitzky G, Lynch SV, Albrecht J, Gomez-Lopez N, Romero R, Stevenson DK, Aghaeepour N, Tarca AL, Costello JC, Sirota M. Golob JL, et al. Among authors: aghaeepour n. Cell Rep Med. 2025 Dec 16;6(12):102428. doi: 10.1016/j.xcrm.2025.102428. Epub 2025 Nov 7. Cell Rep Med. 2025. PMID: 41205590 Free PMC article. No abstract available.

26

Epigenomic profile of GBA1 in Parkinson's disease.

Berson E, Zaghroun R, Santoro M, Bukhari S, Seong D, Shu CH, Perna A, James T, Montine KS, Serrano GE, Beach TG, Keene CD, Chang HY, Corces MR, Cholerton B, Aghaeepour N, Montine TJ. Berson E, et al. Among authors: aghaeepour n. Parkinsonism Relat Disord. 2025 Nov;140:108066. doi: 10.1016/j.parkreldis.2025.108066. Epub 2025 Sep 27. Parkinsonism Relat Disord. 2025. PMID: 41033114

27

Leveraging electronic health records from two hospital systems identifies male infertility-associated comorbidities across time.

Woldemariam SR, Xie F, Roldan A, Roger J, Tang AS, Oskotsky TT, Stevenson DK, Lathi RB, Rajkovic A, Allen IE, Aghaeepour N, Eisenberg M, Sirota M. Woldemariam SR, et al. Among authors: aghaeepour n. Commun Med (Lond). 2025 Sep 1;5(1):380. doi: 10.1038/s43856-025-01071-7. Commun Med (Lond). 2025. PMID: 40890520 Free PMC article.

28

Placental epigenetic clocks derived from crowdsourcing: Implications for the study of accelerated aging in obstetrics.

Bhatti G, Sufriyana H, Romero R, Patel T, Tekola-Ayele F, Alsaggaf I, Gomez-Lopez N, Su ECY, Done B, Hoffmann S, van Bömmel A, Wan C, Albrecht J, Novak C; DREAM Placenta Clock Challenge Consortium; Chaiworapongsa T, Sirota M, Aghaeepour N, Stolovitzky G, Bryant DR, Tarca AL. Bhatti G, et al. Among authors: aghaeepour n. iScience. 2025 Jul 23;28(8):113181. doi: 10.1016/j.isci.2025.113181. eCollection 2025 Aug 15. iScience. 2025. PMID: 40822353 Free PMC article.

29

Benchmarking of pre-training strategies for electronic health record foundation models.

Mataraso S, D'Souza S, Seong D, Berson E, Espinosa C, Aghaeepour N. Mataraso S, et al. Among authors: aghaeepour n. JAMIA Open. 2025 Aug 13;8(4):ooaf090. doi: 10.1093/jamiaopen/ooaf090. eCollection 2025 Aug. JAMIA Open. 2025. PMID: 40809468 Free PMC article.

30

Deep learning-based cell type profiles reveal signatures of Alzheimer's disease resilience and resistance.

Berson E, Perna A, Bukhari S, Kim Y, Xue L, Seong D, Mataraso S, Ghanem M, Chang AL, Montine KS, Keene CD, Kasowski M, Aghaeepour N, Montine TJ. Berson E, et al. Among authors: aghaeepour n. Brain. 2025 Oct 3;148(10):3665-3678. doi: 10.1093/brain/awaf285. Brain. 2025. PMID: 40794555 Free PMC article.

31

Metabolomic Profiles During and After a Hypertensive Disorder of Pregnancy: The EPOCH Study.

Hlatky MA, Shu CH, Bararpour N, Murphy BM, Sorondo SM, Leeper NJ, Wong F, Stevenson DK, Shaw GM, Stefanick ML, Boyd HA, Melbye M, Sedan O, Wong RJ, Snyder MP, Aghaeepour N, Winn VD. Hlatky MA, et al. Among authors: aghaeepour n. Int J Mol Sci. 2025 Jun 26;26(13):6150. doi: 10.3390/ijms26136150. Int J Mol Sci. 2025. PMID: 40649926 Free PMC article.

32

Protocol: the International Milk Composition (IMiC) Consortium - a harmonized secondary analysis of human milk from four studies.

Fehr K, Mertens A, Shu CH, Dailey-Chwalibóg T, Shenhav L, Allen LH, Beggs MR, Bode L, Chooniedass R, DeBoer MD, Deng L, Espinosa C, Hampel D, Jahual A, Jehan F, Jain M, Kolsteren P, Kawle P, Lagerborg KA, Manus MB, Mataraso S, McDermid JM, Muhammad A, Peymani P, Pham M, Shahab-Ferdows S, Shafiq Y, Subramoney V, Sunko D, Toe LC, Turvey SE, Xue L, Rodriguez N, Hubbard A, Aghaeepour N, Azad MB. Fehr K, et al. Among authors: aghaeepour n. Front Nutr. 2025 Jun 10;12:1548739. doi: 10.3389/fnut.2025.1548739. eCollection 2025. Front Nutr. 2025. PMID: 40557242 Free PMC article.

33

A call to action to address escalating global threats to academic research.

Piret G, Fung FM, Fullerton J, Fico G, Ponkratov D, Chen W, Latorre D, Wan KY, Aghaeepour N, Welgryn J, Razi A, Silveyra P, Altun A, Jurkowska RZ, Hughes AC, Wolfram J. Piret G, et al. Among authors: aghaeepour n. Innovation (Camb). 2025 Jan 4;6(4):100758. doi: 10.1016/j.xinn.2024.100758. eCollection 2025 Apr 7. Innovation (Camb). 2025. PMID: 40470320 Free PMC article. Review.

34

Association between gestational weight gain and adverse pregnancy outcomes: cohort analysis from South Asia and Sub-Saharan Africa.

Sebastião YV, Thiruvengadam R, Khanam R, Mehmood U, Pervin J, Ayushi, Desiraju BK, Kabole F, Ahmed S, Aktar S, Chowdhury NH, Qazi MF, Nisar I, Khalid J, Kasaro M, Vwalika B, Khan W, Nu UT, Rahman M, Rahman S, Shaw GM, Stevenson DK, Xu H, Bakari BA, Wadhwa N, Zhang G, Sazawal S, Aghaeepour N, Rahman A, Jehan F, Baqui AH, Stringer JSA, Bhatnagar S. Sebastião YV, et al. Among authors: aghaeepour n. BMJ Public Health. 2025 Feb 4;3(1):e000900. doi: 10.1136/bmjph-2024-000900. eCollection 2025. BMJ Public Health. 2025. PMID: 40433067 Free PMC article.

35

StrokeCog-15 Is an Efficient Neuropsychological Battery to Screen for Cognitive Impairment in Chronic Stroke.

Drag LL, Mlynash M, Aslan A, Musabbir M, Bradley A, Lansberg MG, Allan SM, Aghaeepour N, Smith CJ, Buckwalter MS. Drag LL, et al. Among authors: aghaeepour n. Stroke. 2025 Sep;56(9):2464-2473. doi: 10.1161/STROKEAHA.124.049217. Epub 2025 May 23. Stroke. 2025. PMID: 40406877 Free PMC article.

36

Predicting Placenta Accreta Spectrum Disorder Through Machine Learning Using Metabolomic and Lipidomic Profiling and Clinical Characteristics.

Miller S, Lyell D, Maric I, Lancaster S, Sylvester K, Contrepois K, Kruger S, Burgess J, Stevenson D, Aghaeepour N, Snyder M, Zhang E, Badillo K, Silver R, Einerson BD, Bianco K. Miller S, et al. Among authors: aghaeepour n. Obstet Gynecol. 2025 Jun 1;145(6):721-731. doi: 10.1097/AOG.0000000000005922. Epub 2025 May 1. Obstet Gynecol. 2025. PMID: 40373320 Free article.

37

Digital twins, synthetic patient data, and in-silico trials: can they empower paediatric clinical trials?

Pammi M, Shah PS, Yang LK, Hagan J, Aghaeepour N, Neu J. Pammi M, et al. Among authors: aghaeepour n. Lancet Digit Health. 2025 May;7(5):100851. doi: 10.1016/j.landig.2025.01.007. Epub 2025 May 13. Lancet Digit Health. 2025. PMID: 40360351 Free PMC article. Review.

38

Parkinson's disease is characterized by vitamin B6-dependent inflammatory kynurenine pathway dysfunction.

Wilson EN, Umans J, Swarovski MS, Minhas PS, Mendiola JH, Midttun Ø, Ulvik A, Shahid-Besanti M, Linortner P, Mhatre SD, Wang Q, Channappa D, Corso NK, Tian L, Fredericks CA, Kerchner GA, Plowey ED, Cholerton B, Ueland PM, Zabetian CP, Gray NE, Quinn JF, Montine TJ, Sha SJ, Longo FM, Wolk DA, Chen-Plotkin A, Henderson VW, Wyss-Coray T, Wagner AD, Mormino EC, Aghaeepour N, Poston KL, Andreasson KI. Wilson EN, et al. Among authors: aghaeepour n. NPJ Parkinsons Dis. 2025 Apr 26;11(1):96. doi: 10.1038/s41531-025-00964-7. NPJ Parkinsons Dis. 2025. PMID: 40287426 Free PMC article.

39

Author Correction: AI-guided precision parenteral nutrition for neonatal intensive care units.

Phongpreecha T, Ghanem M, Reiss JD, Oskotsky TT, Mataraso SJ, De Francesco D, Reincke SM, Espinosa C, Chung P, Ng T, Costello JM, Sequoia JA, Razdan S, Xie F, Berson E, Kim Y, Seong D, Szeto MY, Myers F, Gu H, Feister J, Verscaj CP, Rose LA, Sin LWY, Oskotsky B, Roger J, Shu CH, Shome S, Yang LK, Tan Y, Levitte S, Wong RJ, Gaudillière B, Angst MS, Montine TJ, Kerner JA, Keller RL, Shaw GM, Sylvester KG, Fuerch J, Chock V, Gaskari S, Stevenson DK, Sirota M, Prince LS, Aghaeepour N. Phongpreecha T, et al. Among authors: aghaeepour n. Nat Med. 2025 Jun;31(6):2070. doi: 10.1038/s41591-025-03691-x. Nat Med. 2025. PMID: 40205201 Free PMC article. No abstract available.

40

AI Learning for Pediatric Right Ventricular Assessment: Development and Validation Across Multiple Centers.

Reddy C, Yan Y, Qiu M, Tang Y, Jin B, Han Z, Li Y, Zhou S, Tang Q, Xiao H, Yang S, Wen Q, Wu LP, Fu LJ, Jing ZY, Yang YJ, Zhang YQ, Ozawa N, Ichikawa T, Ling E, Wong RJ, Marić I, Aghaeepour N, Gaudilliere B, Angst MS, Sylvester KG, Cohen HJ, Darmstadt GL, Stevenson DK, Chubb H, Ceresnak S, Tandon A, McElhinney DB, Zhang H, Ling XB. Reddy C, et al. Among authors: aghaeepour n. medRxiv [Preprint]. 2025 Mar 15:2025.03.14.25323989. doi: 10.1101/2025.03.14.25323989. medRxiv. 2025. Update in: NPJ Digit Med. 2025 Dec 9;8(1):752. doi: 10.1038/s41746-025-02123-x. PMID: 40162263 Free PMC article. Updated. Preprint.

41

AI-guided precision parenteral nutrition for neonatal intensive care units.

Phongpreecha T, Ghanem M, Reiss JD, Oskotsky TT, Mataraso SJ, De Francesco D, Reincke SM, Espinosa C, Chung P, Ng T, Costello JM, Sequoia JA, Razdan S, Xie F, Berson E, Kim Y, Seong D, Szeto MY, Myers F, Gu H, Feister J, Verscaj CP, Rose LA, Sin LWY, Oskotsky B, Roger J, Shu CH, Shome S, Yang LK, Tan Y, Levitte S, Wong RJ, Gaudillière B, Angst MS, Montine TJ, Kerner JA, Keller RL, Shaw GM, Sylvester KG, Fuerch J, Chock V, Gaskari S, Stevenson DK, Sirota M, Prince LS, Aghaeepour N. Phongpreecha T, et al. Among authors: aghaeepour n. Nat Med. 2025 Jun;31(6):1882-1894. doi: 10.1038/s41591-025-03601-1. Epub 2025 Mar 25. Nat Med. 2025. PMID: 40133525 Free PMC article.

42

Mediterranean vs. Western diet effects on the primate cerebral cortical pre-synaptic proteome: Relationships with the transcriptome and multi-system phenotypes.

Berson E, Frye BM, Gajera CR, Saarunya G, Perna A, Phongpreecha T, Shome S, Negrey JD, Aghaeepour N, Montine TJ, Craft S, Register TC, Shively CA. Berson E, et al. Among authors: aghaeepour n. Alzheimers Dement. 2025 Mar;21(3):e70041. doi: 10.1002/alz.70041. Alzheimers Dement. 2025. PMID: 40109017 Free PMC article.

43

Cellular immune changes during severe antisense oligonucleotide-associated thrombocytopenia in a nonhuman primate model.

Gupta S, Shen L, Henry SP, Aghaeepour N, Narayanan P, Maecker HT. Gupta S, et al. Among authors: aghaeepour n. J Immunol. 2025 Apr 1;214(4):636-650. doi: 10.1093/jimmun/vkae055. J Immunol. 2025. PMID: 40101742 Free PMC article.

44

Mitigation of outcome conflation in predicting patient outcomes using electronic health records.

Reincke SM, Espinosa C, Chung P, James T, Berson E, Aghaeepour N. Reincke SM, et al. Among authors: aghaeepour n. J Am Med Inform Assoc. 2025 May 1;32(5):920-927. doi: 10.1093/jamia/ocaf033. J Am Med Inform Assoc. 2025. PMID: 40056434 Free PMC article.

45

Information Extraction from Clinical Texts with Generative Pre-trained Transformer Models.

Kim MS, Chung P, Aghaeepour N, Kim N. Kim MS, et al. Among authors: aghaeepour n. Int J Med Sci. 2025 Feb 3;22(5):1015-1028. doi: 10.7150/ijms.103332. eCollection 2025. Int J Med Sci. 2025. PMID: 40027192 Free PMC article.

46

A machine learning approach to leveraging electronic health records for enhanced omics analysis.

Mataraso SJ, Espinosa CA, Seong D, Reincke SM, Berson E, Reiss JD, Kim Y, Ghanem M, Shu CH, James T, Tan Y, Shome S, Stelzer IA, Feyaerts D, Wong RJ, Shaw GM, Angst MS, Gaudilliere B, Stevenson DK, Aghaeepour N. Mataraso SJ, et al. Among authors: aghaeepour n. Nat Mach Intell. 2025;7(2):293-306. doi: 10.1038/s42256-024-00974-9. Epub 2025 Jan 16. Nat Mach Intell. 2025. PMID: 40008295 Free PMC article.

47

Exposure to autoimmune disorders is associated with increased Alzheimer's disease risk in a multi-site electronic health record analysis.

Ramey GD, Tang A, Phongpreecha T, Yang MM, Woldemariam SR, Oskotsky TT, Montine TJ, Allen I, Miller ZA, Aghaeepour N, Capra JA, Sirota M. Ramey GD, et al. Among authors: aghaeepour n. Cell Rep Med. 2025 Mar 18;6(3):101980. doi: 10.1016/j.xcrm.2025.101980. Epub 2025 Feb 24. Cell Rep Med. 2025. PMID: 39999839 Free PMC article.

48

PregMedNet: Multifaceted Maternal Medication Impacts on Neonatal Complications.

Kim Y, Marić I, Kashiwagi CM, Han L, Chung P, Reiss JD, Butcher LD, Caoili KJ, Berson E, Xue L, Espinosa C, James T, Shome S, Xie F, Ghanem M, Seong D, Chang AL, Reincke SM, Mataraso S, Shu CH, De Francesco D, Becker M, Kumar WM, Wong R, Gaudilliere B, Angst MS, Shaw GM, Bateman BT, Stevenson DK, Prince LS, Aghaeepour N. Kim Y, et al. Among authors: aghaeepour n. medRxiv [Preprint]. 2025 Oct 1:2025.02.13.25322242. doi: 10.1101/2025.02.13.25322242. medRxiv. 2025. PMID: 39990567 Free PMC article. Preprint.

49

Persistence of a Proteomic Signature After a Hypertensive Disorder of Pregnancy.

Hlatky MA, Shu CH, Stevenson DK, Shaw GM, Stefanick ML, Boyd HA, Melbye M, Plummer XD, Sedan O, Wong RJ, Aghaeepour N, Winn VD. Hlatky MA, et al. Among authors: aghaeepour n. Hypertension. 2025 May;82(5):872-882. doi: 10.1161/HYPERTENSIONAHA.124.24490. Epub 2025 Feb 21. Hypertension. 2025. PMID: 39981573 Free PMC article.

50

Infusion of young donor plasma components in older patients modifies the immune and inflammatory response to surgical tissue injury: a randomized clinical trial.

Gaudilliere B, Xue L, Tsai AS, Gao X, McAllister TN, Tingle M, Porras G, Feinstein I, Feyaerts D, Verdonk F, Sabayev M, Hedou J, Ganio EA, Berson E, Becker M, Espinosa C, Kim Y, Lehallier B, Rawner E, Feng C, Amanatullah DF, Huddleston JI, Goodman SB, Aghaeepour N, Angst MS. Gaudilliere B, et al. Among authors: aghaeepour n. J Transl Med. 2025 Feb 14;23(1):183. doi: 10.1186/s12967-025-06215-w. J Transl Med. 2025. PMID: 39953524 Free PMC article. Clinical Trial.

51

Innovations in acute and chronic pain biomarkers: enhancing diagnosis and personalized therapy.

Mackey S, Aghaeepour N, Gaudilliere B, Kao MC, Kaptan M, Lannon E, Pfyffer D, Weber K. Mackey S, et al. Among authors: aghaeepour n. Reg Anesth Pain Med. 2025 Feb 5;50(2):110-120. doi: 10.1136/rapm-2024-106030. Reg Anesth Pain Med. 2025. PMID: 39909549 Free PMC article. Review.

52

Advancing neonatal health: the promise and challenges of universal genome sequencing in newborn screening.

Stevenson DK, Wong RJ, Reiss JD, Shaw GM, Aghaeepour N, Mahzarnia A, Marić I. Stevenson DK, et al. Among authors: aghaeepour n. Pediatr Res. 2025 Mar;97(4):1258-1260. doi: 10.1038/s41390-025-03874-9. Epub 2025 Jan 20. Pediatr Res. 2025. PMID: 39833347 No abstract available.

53

Impact of digital health interventions on glycemic control and weight management.

Veluvali A, Dehghani Zahedani A, Hosseinian A, Aghaeepour N, McLaughlin T, Woodward M, DiTullio A, Hashemi N, Snyder MP. Veluvali A, et al. Among authors: aghaeepour n. NPJ Digit Med. 2025 Jan 9;8(1):20. doi: 10.1038/s41746-025-01430-7. NPJ Digit Med. 2025. PMID: 39789102 Free PMC article.

54

Transgenerational associations between newborn metabolic profiles and bronchopulmonary dysplasia in neonates born to mothers with an obese phenotype.

Reiss JD, Yang W, Chang AL, Long JZ, Marić I, Profit J, Sylvester KG, Stevenson DK, Aghaeepour N, Shaw GM. Reiss JD, et al. Among authors: aghaeepour n. Sci Rep. 2025 Jan 7;15(1):1144. doi: 10.1038/s41598-025-85252-3. Sci Rep. 2025. PMID: 39774255 Free PMC article.

55

Prediction of late-onset preeclampsia using plasma proteomics: a longitudinal multi-cohort study.

Andresen IJ, Zucknick M, Degnes ML, Angst MS, Aghaeepour N, Romero R, Roland MCP, Tarca AL, Westerberg AC, Michelsen TM. Andresen IJ, et al. Among authors: aghaeepour n. Sci Rep. 2024 Dec 28;14(1):30813. doi: 10.1038/s41598-024-81277-2. Sci Rep. 2024. PMID: 39730472 Free PMC article.

56

Impact of air pollution exposure on cytokines and histone modification profiles at single-cell levels during pregnancy.

Jung YS, Aguilera J, Kaushik A, Ha JW, Cansdale S, Yang E, Ahmed R, Lurmann F, Lutzker L, Hammond SK, Balmes J, Noth E, Burt TD, Aghaeepour N, Waldrop AR, Khatri P, Utz PJ, Rosenburg-Hasson Y, DeKruyff R, Maecker HT, Johnson MM, Nadeau KC. Jung YS, et al. Among authors: aghaeepour n. Sci Adv. 2024 Nov 29;10(48):eadp5227. doi: 10.1126/sciadv.adp5227. Epub 2024 Nov 29. Sci Adv. 2024. PMID: 39612334 Free PMC article.

57

Prediction of risk for early or very early preterm births using high-resolution urinary metabolomic profiling.

Zhang Y, Sylvester KG, Wong RJ, Blumenfeld YJ, Hwa KY, Chou CJ, Thyparambil S, Liao W, Han Z, Schilling J, Jin B, Marić I, Aghaeepour N, Angst MS, Gaudilliere B, Winn VD, Shaw GM, Tian L, Luo RY, Darmstadt GL, Cohen HJ, Stevenson DK, McElhinney DB, Ling XB. Zhang Y, et al. Among authors: aghaeepour n. BMC Pregnancy Childbirth. 2024 Nov 25;24(1):783. doi: 10.1186/s12884-024-06974-2. BMC Pregnancy Childbirth. 2024. PMID: 39587571 Free PMC article.

58

Towards a new taxonomy of preterm birth.

Stevenson DK, Chang AL, Wong RJ, Reiss JD, Gaudillière B, Sylvester KG, Ling XB, Angst MS, Shaw GM, Katz M, Aghaeepour N, Marić I. Stevenson DK, et al. Among authors: aghaeepour n. J Perinatol. 2025 Aug;45(8):1158-1162. doi: 10.1038/s41372-024-02183-z. Epub 2024 Nov 20. J Perinatol. 2025. PMID: 39567650 Free PMC article. Review.

59

Corrigendum to "Mode of delivery predicts postpartum maternal leukocyte telomere length" [Eur. J. Obstetr. Gynecol. Reprod. Biol. 300 (2024) 224-229].

Panelli DM, Mayo JA, Wong RJ, Becker M, Feyaerts D, Marić I, Wu E, Gotlib IH, Gaudillière B, Aghaeepour N, Druzin ML, Stevenson DK, Shaw GM, Bianco K. Panelli DM, et al. Among authors: aghaeepour n. Eur J Obstet Gynecol Reprod Biol. 2025 Jan;304:35. doi: 10.1016/j.ejogrb.2024.11.017. Epub 2024 Nov 19. Eur J Obstet Gynecol Reprod Biol. 2025. PMID: 39561615 Free PMC article. No abstract available.

60

Generating pregnant patient biological profiles by deconvoluting clinical records with electronic health record foundation models.

Seong D, Mataraso S, Espinosa C, Berson E, Reincke SM, Xue L, Kashiwagi C, Kim Y, Shu CH, Chung P, Ghanem M, Xie F, Wong RJ, Angst MS, Gaudilliere B, Shaw GM, Stevenson DK, Aghaeepour N. Seong D, et al. Among authors: aghaeepour n. Brief Bioinform. 2024 Sep 23;25(6):bbae574. doi: 10.1093/bib/bbae574. Brief Bioinform. 2024. PMID: 39545787 Free PMC article.

61

Proteins in scalp hair of preschool children.

Rovnaghi CR, Singhal K, Leib RD, Xenochristou M, Aghaeepour N, Chien AS, Ruiz MO, Dinakarpandian D, Anand KJS. Rovnaghi CR, et al. Among authors: aghaeepour n. Psych. 2024 Mar;6(1):143-162. doi: 10.3390/psych6010009. Epub 2024 Jan 29. Psych. 2024. PMID: 39534431 Free PMC article.

62

An immune signature of postoperative cognitive decline: a prospective cohort study.

Verdonk F, Cambriel A, Hedou J, Ganio E, Bellan G, Gaudilliere D, Einhaus J, Sabayev M, Stelzer IA, Feyaerts D, Bonham AT, Ando K, Choisy B, Drover D, Heifets B, Chretien F, Aghaeepour N, Angst MS, Molliex S, Sharshar T, Gaillard R, Gaudilliere B. Verdonk F, et al. Among authors: aghaeepour n. Int J Surg. 2024 Dec 1;110(12):7749-7762. doi: 10.1097/JS9.0000000000002118. Int J Surg. 2024. PMID: 39411891 Free PMC article.

63

Parkinson's disease is characterized by vitamin B6-dependent inflammatory kynurenine pathway dysfunction.

Wilson E, Umans J, Swarovski M, Minhas P, Midttun Ø, Ulvik AA, Shahid-Besanti M, Linortner P, Mhatre S, Wang Q, Channappa D, Corso N, Tian L, Fredericks C, Kerchner G, Plowey E, Cholerton B, Ueland P, Zabetian C, Gray N, Quinn J, Montine T, Sha S, Longo F, Wolk D, Chen-Plotkin A, Henderson V, Wyss-Coray T, Wagner A, Mormino E, Aghaeepour N, Poston K, Andreasson K. Wilson E, et al. Among authors: aghaeepour n. Res Sq [Preprint]. 2024 Sep 26:rs.3.rs-4980210. doi: 10.21203/rs.3.rs-4980210/v1. Res Sq. 2024. Update in: NPJ Parkinsons Dis. 2025 Apr 26;11(1):96. doi: 10.1038/s41531-025-00964-7. PMID: 39399688 Free PMC article. Updated. Preprint.

64

Early prediction of mortality and morbidities in VLBW preterm neonates using machine learning.

Shu CH, Zebda R, Espinosa C, Reiss J, Debuyserie A, Reber K, Aghaeepour N, Pammi M. Shu CH, et al. Among authors: aghaeepour n. Pediatr Res. 2025 May;97(6):2056-2064. doi: 10.1038/s41390-024-03604-7. Epub 2024 Oct 8. Pediatr Res. 2025. PMID: 39379627 Free PMC article.

65

VMAP: Vaginal Microbiome Atlas during Pregnancy.

Parraga-Leo A, Oskotsky TT, Oskotsky B, Wibrand C, Roldan A, Tang AS, Ha CWY, Wong RJ, Minot SS, Andreoletti G, Kosti I, Theis KR, Ng S, Lee YS, Diaz-Gimeno P, Bennett PR, MacIntyre DA, Lynch SV, Romero R, Tarca AL, Stevenson DK, Aghaeepour N, Golob JL, Sirota M. Parraga-Leo A, et al. Among authors: aghaeepour n. JAMIA Open. 2024 Sep 27;7(3):ooae099. doi: 10.1093/jamiaopen/ooae099. eCollection 2024 Oct. JAMIA Open. 2024. PMID: 39345789 Free PMC article.

66

Factor Eight Inhibitor Bypass Activity Use in Cardiac Surgery: A Propensity-matched Analysis of Safety Outcomes.

Nicholas JA, Harrison N, Chakraborty D, Chang AL, Aghaeepour N, Wirtz K, Nielson E, Parsons C, Jackson E, Panigrahi AK. Nicholas JA, et al. Among authors: aghaeepour n. Anesthesiology. 2024 Dec 1;141(6):1051-1064. doi: 10.1097/ALN.0000000000005208. Anesthesiology. 2024. PMID: 39186670

67

Unlocking human immune system complexity through AI.

Berson E, Chung P, Espinosa C, Montine TJ, Aghaeepour N. Berson E, et al. Among authors: aghaeepour n. Nat Methods. 2024 Aug;21(8):1400-1402. doi: 10.1038/s41592-024-02351-1. Nat Methods. 2024. PMID: 39122943 Free PMC article.

68

Single-cell peripheral immunoprofiling of lewy body and Parkinson's disease in a multi-site cohort.

Phongpreecha T, Mathi K, Cholerton B, Fox EJ, Sigal N, Espinosa C, Reincke M, Chung P, Hwang LJ, Gajera CR, Berson E, Perna A, Xie F, Shu CH, Hazra D, Channappa D, Dunn JE, Kipp LB, Poston KL, Montine KS, Maecker HT, Aghaeepour N, Montine TJ. Phongpreecha T, et al. Among authors: aghaeepour n. Mol Neurodegener. 2024 Aug 1;19(1):59. doi: 10.1186/s13024-024-00748-2. Mol Neurodegener. 2024. PMID: 39090623 Free PMC article.

69

Association of pregnancy complications and postpartum maternal leukocyte telomeres in two diverse cohorts: a nested case-control study.

Panelli DM, Wang X, Mayo J, Wong RJ, Hong X, Becker M, Aghaeepour N, Druzin ML, Zuckerman BS, Stevenson DK, Shaw DrPH GM, Bianco K. Panelli DM, et al. Among authors: aghaeepour n. BMC Pregnancy Childbirth. 2024 Jul 20;24(1):490. doi: 10.1186/s12884-024-06688-5. BMC Pregnancy Childbirth. 2024. PMID: 39033276 Free PMC article.

70

Mode of delivery predicts postpartum maternal leukocyte telomere length.

Panelli DM, Mayo JA, Wong RJ, Becker M, Feyaerts D, Marić I, Wu E, Gotlib IH, Gaudillière B, Aghaeepour N, Druzin ML, Stevenson DK, Shaw GM, Bianco K. Panelli DM, et al. Among authors: aghaeepour n. Eur J Obstet Gynecol Reprod Biol. 2024 Sep;300:224-229. doi: 10.1016/j.ejogrb.2024.07.026. Epub 2024 Jul 19. Eur J Obstet Gynecol Reprod Biol. 2024. PMID: 39032311 Free PMC article.

71

Artificial Intelligence in Perioperative Care: Opportunities and Challenges.

Han L, Char DS, Aghaeepour N; Stanford Anesthesia AI Working Group. Han L, et al. Among authors: aghaeepour n. Anesthesiology. 2024 Aug 1;141(2):379-387. doi: 10.1097/ALN.0000000000005013. Anesthesiology. 2024. PMID: 38980160 Free PMC article.

72

Large Language Model Capabilities in Perioperative Risk Prediction and Prognostication.

Chung P, Fong CT, Walters AM, Aghaeepour N, Yetisgen M, O'Reilly-Shah VN. Chung P, et al. Among authors: aghaeepour n. JAMA Surg. 2024 Aug 1;159(8):928-937. doi: 10.1001/jamasurg.2024.1621. JAMA Surg. 2024. PMID: 38837145 Free PMC article.

73

Associations between anxiety, sleep, and blood pressure parameters in pregnancy: a prospective pilot cohort study.

Miller HE, Simpson SL, Hurtado J, Boncompagni A, Chueh J, Shu CH, Barwick F, Leonard SA, Carvalho B, Sultan P, Aghaeepour N, Druzin M, Panelli DM. Miller HE, et al. Among authors: aghaeepour n. BMC Pregnancy Childbirth. 2024 May 15;24(1):366. doi: 10.1186/s12884-024-06540-w. BMC Pregnancy Childbirth. 2024. PMID: 38750438 Free PMC article.

74

Exposure to autoimmune disorders increases Alzheimer's disease risk in a multi-site electronic health record analysis.

Ramey GD, Tang A, Phongpreecha T, Yang MM, Woldemariam SR, Oskotsky TT, Montine TJ, Allen I, Miller ZA, Aghaeepour N, Capra JA, Sirota M. Ramey GD, et al. Among authors: aghaeepour n. medRxiv [Preprint]. 2024 May 4:2024.05.02.24306649. doi: 10.1101/2024.05.02.24306649. medRxiv. 2024. Update in: Cell Rep Med. 2025 Mar 18;6(3):101980. doi: 10.1016/j.xcrm.2025.101980. PMID: 38746318 Free PMC article. Updated. Preprint.

75

Computational Approaches for Predicting Preterm Birth and Newborn Outcomes.

Seong D, Espinosa C, Aghaeepour N; Aghaeepour Laboratory. Seong D, et al. Among authors: aghaeepour n. Clin Perinatol. 2024 Jun;51(2):461-473. doi: 10.1016/j.clp.2024.02.005. Epub 2024 Mar 8. Clin Perinatol. 2024. PMID: 38705652 Free PMC article. Review.

76

Predicting Preterm Birth Using Proteomics.

Marić I, Stevenson DK, Aghaeepour N, Gaudillière B, Wong RJ, Angst MS. Marić I, et al. Among authors: aghaeepour n. Clin Perinatol. 2024 Jun;51(2):391-409. doi: 10.1016/j.clp.2024.02.011. Epub 2024 Mar 23. Clin Perinatol. 2024. PMID: 38705648 Free PMC article. Review.

77

Evaluation of Sleep in Pregnant Inpatients Compared With Outpatients.

Panelli DM, Miller HE, Simpson SL, Hurtado J, Shu CH, Boncompagni AC, Chueh J, Barwick F, Carvalho B, Sultan P, Aghaeepour N, Druzin ML. Panelli DM, et al. Among authors: aghaeepour n. Obstet Gynecol. 2024 Jun 1;143(6):803-810. doi: 10.1097/AOG.0000000000005591. Epub 2024 Apr 25. Obstet Gynecol. 2024. PMID: 38663016 Free PMC article.

78

Comprehensive overview of the anesthesiology research landscape: A machine Learning Analysis of 737 NIH-funded anesthesiology primary Investigator's publication trends.

Ghanem M, Espinosa C, Chung P, Reincke M, Harrison N, Phongpreecha T, Shome S, Saarunya G, Berson E, James T, Xie F, Shu CH, Hazra D, Mataraso S, Kim Y, Seong D, Chakraborty D, Studer M, Xue L, Marić I, Chang AL, Tjoa E, Gaudillière B, Tawfik VL, Mackey S, Aghaeepour N. Ghanem M, et al. Among authors: aghaeepour n. Heliyon. 2024 Apr 3;10(7):e29050. doi: 10.1016/j.heliyon.2024.e29050. eCollection 2024 Apr 15. Heliyon. 2024. PMID: 38623206 Free PMC article.

79

Intra- and post-pandemic impact of the COVID-19 outbreak on Stanford Health Care.

Phongpreecha T, Berson E, Xue L, Shome S, Saarunya G, Fralick J, Ruiz-Tagle BG, Foody A, Chin AL, Lim M, Arthofer R, Albini C, Montine K, Folkins AK, Kong CS, Aghaeepour N, Montine T, Kerr A. Phongpreecha T, et al. Among authors: aghaeepour n. Acad Pathol. 2024 Mar 25;11(2):100113. doi: 10.1016/j.acpath.2024.100113. eCollection 2024 Apr-Jun. Acad Pathol. 2024. PMID: 38562568 Free PMC article.

80

Physical activity among pregnant inpatients and outpatients and associations with anxiety.

Panelli DM, Miller HE, Simpson SL, Hurtado J, Shu CH, Boncompagni AC, Chueh J, Carvalho B, Sultan P, Aghaeepour N, Druzin ML. Panelli DM, et al. Among authors: aghaeepour n. Eur J Obstet Gynecol Reprod Biol. 2024 Jun;297:8-14. doi: 10.1016/j.ejogrb.2024.03.033. Epub 2024 Mar 28. Eur J Obstet Gynecol Reprod Biol. 2024. PMID: 38554481 Free PMC article.

81

Incidence of Coexisting Diseases in Adult Moyamoya Vasculopathy Patients by Racial Group at a Large American Referral Center.

Wheaton N, Harrison N, Doufas A, Chakraborty D, Chang AL, Aghaeepour N, Burbridge MA. Wheaton N, et al. Among authors: aghaeepour n. J Neurosurg Anesthesiol. 2025 Jan 1;37(1):88-90. doi: 10.1097/ANA.0000000000000962. Epub 2024 Mar 27. J Neurosurg Anesthesiol. 2025. PMID: 38533743 No abstract available.

82

MedAlign: A Clinician-Generated Dataset for Instruction Following with Electronic Medical Records.

Fleming SL, Lozano A, Haberkorn WJ, Jindal JA, Reis E, Thapa R, Blankemeier L, Genkins JZ, Steinberg E, Nayak A, Patel B, Chiang CC, Callahan A, Huo Z, Gatidis S, Adams S, Fayanju O, Shah SJ, Savage T, Goh E, Chaudhari AS, Aghaeepour N, Sharp C, Pfeffer MA, Liang P, Chen JH, Morse KE, Brunskill EP, Fries JA, Shah NH. Fleming SL, et al. Among authors: aghaeepour n. Proc AAAI Conf Artif Intell. 2024 Mar 25;38(20):22021-22030. doi: 10.1609/aaai.v38i20.30205. Epub 2024 Mar 24. Proc AAAI Conf Artif Intell. 2024. PMID: 41584261 Free PMC article.

83

An immune signature of postoperative cognitive decline in elderly patients.

Verdonk F, Cambriel A, Hedou J, Ganio E, Bellan G, Gaudilliere D, Einhaus J, Sabayev M, Stelzer IA, Feyaerts D, Bonham AT, Ando K, Choisy B, Drover D, Heifets B, Chretien F, Aghaeepour N, Angst MS, Molliex S, Sharshar T, Gaillard R, Gaudilliere B. Verdonk F, et al. Among authors: aghaeepour n. bioRxiv [Preprint]. 2024 Mar 5:2024.03.02.582845. doi: 10.1101/2024.03.02.582845. bioRxiv. 2024. Update in: Int J Surg. 2024 Dec 01;110(12):7749-7762. doi: 10.1097/JS9.0000000000002118. PMID: 38496400 Free PMC article. Updated. Preprint.

84

Corrigendum: Advances and potential of omics studies for understanding the development of food allergy.

Sindher SB, Chin AR, Aghaeepour N, Prince L, Maecker H, Shaw GM, Stevenson D, Nadeau KC, Snyder M, Khatri P, Boyd SD, Winn VD, Angst MS, Chinthrajah RS. Sindher SB, et al. Among authors: aghaeepour n. Front Allergy. 2024 Feb 23;5:1373485. doi: 10.3389/falgy.2024.1373485. eCollection 2024. Front Allergy. 2024. PMID: 38464397 Free PMC article.

85

Reassessing acquired neonatal intestinal diseases using unsupervised machine learning.

Gipson DR, Chang AL, Lure AC, Mehta SA, Gowen T, Shumans E, Stevenson D, de la Cruz D, Aghaeepour N, Neu J. Gipson DR, et al. Among authors: aghaeepour n. Pediatr Res. 2024 Jul;96(1):165-171. doi: 10.1038/s41390-024-03074-x. Epub 2024 Feb 27. Pediatr Res. 2024. PMID: 38413766

86

Leveraging electronic health records and knowledge networks for Alzheimer's disease prediction and sex-specific biological insights.

Tang AS, Rankin KP, Cerono G, Miramontes S, Mills H, Roger J, Zeng B, Nelson C, Soman K, Woldemariam S, Li Y, Lee A, Bove R, Glymour M, Aghaeepour N, Oskotsky TT, Miller Z, Allen IE, Sanders SJ, Baranzini S, Sirota M. Tang AS, et al. Among authors: aghaeepour n. Nat Aging. 2024 Mar;4(3):379-395. doi: 10.1038/s43587-024-00573-8. Epub 2024 Feb 21. Nat Aging. 2024. PMID: 38383858 Free PMC article.

87

Multimodal machine learning for modeling infant head circumference, mothers' milk composition, and their shared environment.

Becker M, Fehr K, Goguen S, Miliku K, Field C, Robertson B, Yonemitsu C, Bode L, Simons E, Marshall J, Dawod B, Mandhane P, Turvey SE, Moraes TJ, Subbarao P, Rodriguez N, Aghaeepour N, Azad MB. Becker M, et al. Among authors: aghaeepour n. Sci Rep. 2024 Feb 5;14(1):2977. doi: 10.1038/s41598-024-52323-w. Sci Rep. 2024. PMID: 38316895 Free PMC article.

88

Large-scale proteomics in the first trimester of pregnancy predict psychopathology and temperament in preschool children: an exploratory study.

Buthmann JL, Miller JG, Aghaeepour N, King LS, Stevenson DK, Shaw GM, Wong RJ, Gotlib IH. Buthmann JL, et al. Among authors: aghaeepour n. J Child Psychol Psychiatry. 2024 Aug;65(8):1098-1107. doi: 10.1111/jcpp.13948. Epub 2024 Jan 29. J Child Psychol Psychiatry. 2024. PMID: 38287782 Free PMC article.

89

Correction: Digital health application integrating wearable data and behavioral patterns improves metabolic health.

Zahedani AD, McLaughlin T, Veluvali A, Aghaeepour N, Hosseinian A, Agarwal S, Ruan J, Tripathi S, Woodward M, Hashemi N, Snyder M. Zahedani AD, et al. Among authors: aghaeepour n. NPJ Digit Med. 2024 Jan 12;7(1):9. doi: 10.1038/s41746-024-00996-y. NPJ Digit Med. 2024. PMID: 38216626 Free PMC article. No abstract available.

90

Understanding the molecular basis of resilience to Alzheimer's disease.

Montine KS, Berson E, Phongpreecha T, Huang Z, Aghaeepour N, Zou JY, MacCoss MJ, Montine TJ. Montine KS, et al. Among authors: aghaeepour n. Front Neurosci. 2023 Dec 19;17:1311157. doi: 10.3389/fnins.2023.1311157. eCollection 2023. Front Neurosci. 2023. PMID: 38192507 Free PMC article. Review.

91

Discovery of sparse, reliable omic biomarkers with Stabl.

Hédou J, Marić I, Bellan G, Einhaus J, Gaudillière DK, Ladant FX, Verdonk F, Stelzer IA, Feyaerts D, Tsai AS, Ganio EA, Sabayev M, Gillard J, Amar J, Cambriel A, Oskotsky TT, Roldan A, Golob JL, Sirota M, Bonham TA, Sato M, Diop M, Durand X, Angst MS, Stevenson DK, Aghaeepour N, Montanari A, Gaudillière B. Hédou J, et al. Among authors: aghaeepour n. Nat Biotechnol. 2024 Oct;42(10):1581-1593. doi: 10.1038/s41587-023-02033-x. Epub 2024 Jan 2. Nat Biotechnol. 2024. PMID: 38168992 Free PMC article.

92

Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research.

Golob JL, Oskotsky TT, Tang AS, Roldan A, Chung V, Ha CWY, Wong RJ, Flynn KJ, Parraga-Leo A, Wibrand C, Minot SS, Oskotsky B, Andreoletti G, Kosti I, Bletz J, Nelson A, Gao J, Wei Z, Chen G, Tang ZZ, Novielli P, Romano D, Pantaleo E, Amoroso N, Monaco A, Vacca M, De Angelis M, Bellotti R, Tangaro S, Kuntzleman A, Bigcraft I, Techtmann S, Bae D, Kim E, Jeon J, Joe S; Preterm Birth DREAM Community; Theis KR, Ng S, Lee YS, Diaz-Gimeno P, Bennett PR, MacIntyre DA, Stolovitzky G, Lynch SV, Albrecht J, Gomez-Lopez N, Romero R, Stevenson DK, Aghaeepour N, Tarca AL, Costello JC, Sirota M. Golob JL, et al. Among authors: aghaeepour n. Cell Rep Med. 2024 Jan 16;5(1):101350. doi: 10.1016/j.xcrm.2023.101350. Epub 2023 Dec 21. Cell Rep Med. 2024. PMID: 38134931 Free PMC article.

93

Large-scale correlation network construction for unraveling the coordination of complex biological systems.

Becker M, Nassar H, Espinosa C, Stelzer IA, Feyaerts D, Berson E, Bidoki NH, Chang AL, Saarunya G, Culos A, De Francesco D, Fallahzadeh R, Liu Q, Kim Y, Marić I, Mataraso SJ, Payrovnaziri SN, Phongpreecha T, Ravindra NG, Stanley N, Shome S, Tan Y, Thuraiappah M, Xenochristou M, Xue L, Shaw G, Stevenson D, Angst MS, Gaudilliere B, Aghaeepour N. Becker M, et al. Among authors: aghaeepour n. Nat Comput Sci. 2023 Apr;3(4):346-359. doi: 10.1038/s43588-023-00429-y. Epub 2023 Apr 13. Nat Comput Sci. 2023. PMID: 38116462 Free PMC article.

94

Digital health application integrating wearable data and behavioral patterns improves metabolic health.

Zahedani AD, McLaughlin T, Veluvali A, Aghaeepour N, Hosseinian A, Agarwal S, Ruan J, Tripathi S, Woodward M, Hashemi N, Snyder M. Zahedani AD, et al. Among authors: aghaeepour n. NPJ Digit Med. 2023 Nov 25;6(1):216. doi: 10.1038/s41746-023-00956-y. NPJ Digit Med. 2023. PMID: 38001287 Free PMC article.

95

Quantitative estimate of cognitive resilience and its medical and genetic associations.

Phongpreecha T, Godrich D, Berson E, Espinosa C, Kim Y, Cholerton B, Chang AL, Mataraso S, Bukhari SA, Perna A, Yakabi K, Montine KS, Poston KL, Mormino E, White L, Beecham G, Aghaeepour N, Montine TJ. Phongpreecha T, et al. Among authors: aghaeepour n. Alzheimers Res Ther. 2023 Nov 6;15(1):192. doi: 10.1186/s13195-023-01329-z. Alzheimers Res Ther. 2023. PMID: 37926851 Free PMC article.

96

Liquid-biopsy proteomics combined with AI identifies cellular drivers of eye aging and disease in vivo.

Wolf J, Rasmussen DK, Sun YJ, Vu JT, Wang E, Espinosa C, Bigini F, Chang RT, Montague AA, Tang PH, Mruthyunjaya P, Aghaeepour N, Dufour A, Bassuk AG, Mahajan VB. Wolf J, et al. Among authors: aghaeepour n. Cell. 2023 Oct 26;186(22):4868-4884.e12. doi: 10.1016/j.cell.2023.09.012. Epub 2023 Oct 19. Cell. 2023. PMID: 37863056 Free PMC article.

97

Deep representation learning identifies associations between physical activity and sleep patterns during pregnancy and prematurity.

Ravindra NG, Espinosa C, Berson E, Phongpreecha T, Zhao P, Becker M, Chang AL, Shome S, Marić I, De Francesco D, Mataraso S, Saarunya G, Thuraiappah M, Xue L, Gaudillière B, Angst MS, Shaw GM, Herzog ED, Stevenson DK, England SK, Aghaeepour N. Ravindra NG, et al. Among authors: aghaeepour n. NPJ Digit Med. 2023 Sep 28;6(1):171. doi: 10.1038/s41746-023-00911-x. NPJ Digit Med. 2023. PMID: 37770643 Free PMC article.

98

Cross-species comparative analysis of single presynapses.

Berson E, Gajera CR, Phongpreecha T, Perna A, Bukhari SA, Becker M, Chang AL, De Francesco D, Espinosa C, Ravindra NG, Postupna N, Latimer CS, Shively CA, Register TC, Craft S, Montine KS, Fox EJ, Keene CD, Bendall SC, Aghaeepour N, Montine TJ. Berson E, et al. Among authors: aghaeepour n. Sci Rep. 2023 Aug 24;13(1):13849. doi: 10.1038/s41598-023-40683-8. Sci Rep. 2023. PMID: 37620363 Free PMC article.

99

Whole genome deconvolution unveils Alzheimer's resilient epigenetic signature.

Berson E, Sreenivas A, Phongpreecha T, Perna A, Grandi FC, Xue L, Ravindra NG, Payrovnaziri N, Mataraso S, Kim Y, Espinosa C, Chang AL, Becker M, Montine KS, Fox EJ, Chang HY, Corces MR, Aghaeepour N, Montine TJ. Berson E, et al. Among authors: aghaeepour n. Nat Commun. 2023 Aug 16;14(1):4947. doi: 10.1038/s41467-023-40611-4. Nat Commun. 2023. PMID: 37587197 Free PMC article.

100

Variability and relative contribution of surgeon- and anesthesia-specific time components to total procedural time in cardiac surgery.

Vanneman MW, Thuraiappah M, Feinstein I, Fielding-Singh V, Peterson A, Kronenberg S, Angst MS, Aghaeepour N. Vanneman MW, et al. Among authors: aghaeepour n. J Thorac Cardiovasc Surg. 2024 Aug;168(2):559-568.e6. doi: 10.1016/j.jtcvs.2023.08.011. Epub 2023 Aug 12. J Thorac Cardiovasc Surg. 2024. PMID: 37574007 Free PMC article.

101

Machine learning models of plasma proteomic data predict mood in chronic stroke and tie it to aberrant peripheral immune responses.

Bidoki NH, Zera KA, Nassar H, Drag LL, Mlynash M, Osborn E, Musabbir M, Kim DE, Paula Mendez M, Lansberg MG, Aghaeepour N, Buckwalter MS. Bidoki NH, et al. Among authors: aghaeepour n. Brain Behav Immun. 2023 Nov;114:144-153. doi: 10.1016/j.bbi.2023.08.002. Epub 2023 Aug 7. Brain Behav Immun. 2023. PMID: 37557961 Free PMC article. Review.

102

Comparative predictive power of serum vs plasma proteomic signatures in feto-maternal medicine.

Espinosa C, Ali SM, Khan W, Khanam R, Pervin J, Price JT, Rahman S, Hasan T, Ahmed S, Raqib R, Rahman M, Aktar S, Nisar MI, Khalid J, Dhingra U, Dutta A, Deb S, Stringer JSA, Wong RJ, Shaw GM, Stevenson DK, Darmstadt GL, Gaudilliere B, Baqui AH, Jehan F, Rahman A, Sazawal S, Vwalika B, Aghaeepour N, Angst MS. Espinosa C, et al. Among authors: aghaeepour n. AJOG Glob Rep. 2023 Jun 12;3(3):100244. doi: 10.1016/j.xagr.2023.100244. eCollection 2023 Aug. AJOG Glob Rep. 2023. PMID: 37456144 Free PMC article.

103

Multiomic signals associated with maternal epidemiological factors contributing to preterm birth in low- and middle-income countries.

Espinosa CA, Khan W, Khanam R, Das S, Khalid J, Pervin J, Kasaro MP, Contrepois K, Chang AL, Phongpreecha T, Michael B, Ellenberger M, Mehmood U, Hotwani A, Nizar A, Kabir F, Wong RJ, Becker M, Berson E, Culos A, De Francesco D, Mataraso S, Ravindra N, Thuraiappah M, Xenochristou M, Stelzer IA, Marić I, Dutta A, Raqib R, Ahmed S, Rahman S, Hasan ASMT, Ali SM, Juma MH, Rahman M, Aktar S, Deb S, Price JT, Wise PH, Winn VD, Druzin ML, Gibbs RS, Darmstadt GL, Murray JC, Stringer JSA, Gaudilliere B, Snyder MP, Angst MS, Rahman A, Baqui AH, Jehan F, Nisar MI, Vwalika B, Sazawal S, Shaw GM, Stevenson DK, Aghaeepour N. Espinosa CA, et al. Among authors: aghaeepour n. Sci Adv. 2023 May 24;9(21):eade7692. doi: 10.1126/sciadv.ade7692. Epub 2023 May 26. Sci Adv. 2023. PMID: 37224249 Free PMC article.

104

Evidence for human milk as a biological system and recommendations for study design-a report from "Breastmilk Ecology: Genesis of Infant Nutrition (BEGIN)" Working Group 4.

Donovan SM, Aghaeepour N, Andres A, Azad MB, Becker M, Carlson SE, Järvinen KM, Lin W, Lönnerdal B, Slupsky CM, Steiber AL, Raiten DJ. Donovan SM, et al. Among authors: aghaeepour n. Am J Clin Nutr. 2023 Apr;117 Suppl 1(Suppl 1):S61-S86. doi: 10.1016/j.ajcnut.2022.12.021. Am J Clin Nutr. 2023. PMID: 37173061 Free PMC article.

105

Feature-weighted elastic net: using "features of features" for better prediction.

Tay JK, Aghaeepour N, Hastie T, Tibshirani R. Tay JK, et al. Among authors: aghaeepour n. Stat Sin. 2023 Jan;33(1):259-279. doi: 10.5705/ss.202020.0226. Stat Sin. 2023. PMID: 37102071 Free PMC article.

106

Advances and potential of omics studies for understanding the development of food allergy.

Sindher SB, Chin AR, Aghaeepour N, Prince L, Maecker H, Shaw GM, Stevenson DK, Nadeau KC, Snyder M, Khatri P, Boyd SD, Winn VD, Angst MS, Chinthrajah RS. Sindher SB, et al. Among authors: aghaeepour n. Front Allergy. 2023 Mar 24;4:1149008. doi: 10.3389/falgy.2023.1149008. eCollection 2023. Front Allergy. 2023. PMID: 37034151 Free PMC article. Review.

107

Author Correction: Early response evaluation by single cell signaling profiling in acute myeloid leukemia.

Tislevoll BS, Hellesøy M, Fagerholt OHE, Gullaksen SE, Srivastava A, Birkeland E, Kleftogiannis D, Ayuda-Durán P, Piechaczyk L, Tadele DS, Skavland J, Baliakas P, Hovland R, Andresen V, Seternes OM, Tvedt THA, Aghaeepour N, Gavasso S, Porkka K, Jonassen I, Fløisand Y, Enserink J, Blaser N, Gjertsen BT. Tislevoll BS, et al. Among authors: aghaeepour n. Nat Commun. 2023 Mar 30;14(1):1767. doi: 10.1038/s41467-023-37488-8. Nat Commun. 2023. PMID: 36997540 Free PMC article. No abstract available.

108

Leveraging electronic health records to identify risk factors for recurrent pregnancy loss across two medical centers: a case-control study.

Roger J, Xie F, Costello J, Tang A, Liu J, Oskotsky T, Woldemariam S, Kosti I, Le B, Snyder MP, Giudice LC, Torgerson D, Shaw GM, Stevenson DK, Rajkovic A, Glymour MM, Aghaeepour N, Cakmak H, Lathi RB, Sirota M. Roger J, et al. Among authors: aghaeepour n. Res Sq [Preprint]. 2023 Mar 31:rs.3.rs-2631220. doi: 10.21203/rs.3.rs-2631220/v2. Res Sq. 2023. Update in: iScience. 2026 Jan 07;29(2):114633. doi: 10.1016/j.isci.2026.114633. PMID: 36993325 Free PMC article. Updated. Preprint.

109

VMAP: Vaginal Microbiome Atlas During Pregnancy.

Parraga-Leo A, Oskotsky TT, Oskotsky B, Wibrand C, Roldan A, Tang A, Ha CWY, Wong RJ, Minot SS, Andreoletti G, Kosti I, Theis KR, Ng S, Lee YS, Diaz-Gimeno P, Bennett PR, MacIntyre DA, Lynch SV, Romero R, Tarca AL, Stevenson DK, Aghaeepour N, Golob J, Sirota M. Parraga-Leo A, et al. Among authors: aghaeepour n. medRxiv [Preprint]. 2023 Apr 5:2023.03.21.23286947. doi: 10.1101/2023.03.21.23286947. medRxiv. 2023. Update in: JAMIA Open. 2024 Sep 27;7(3):ooae099. doi: 10.1093/jamiaopen/ooae099. PMID: 36993193 Free PMC article. Updated. Preprint.

110

Microbiome Preterm Birth DREAM Challenge: Crowdsourcing Machine Learning Approaches to Advance Preterm Birth Research.

Golob JL, Oskotsky TT, Tang AS, Roldan A, Chung V, Ha CWY, Wong RJ, Flynn KJ, Parraga-Leo A, Wibrand C, Minot SS, Andreoletti G, Kosti I, Bletz J, Nelson A, Gao J, Wei Z, Chen G, Tang ZZ, Novielli P, Romano D, Pantaleo E, Amoroso N, Monaco A, Vacca M, De Angelis M, Bellotti R, Tangaro S, Kuntzleman A, Bigcraft I, Techtmann S, Bae D, Kim E, Jeon J, Joe S; Preterm Birth DREAM Community; Theis KR, Ng S, Lee Li YS, Diaz-Gimeno P, Bennett PR, MacIntyre DA, Stolovitzky G, Lynch SV, Albrecht J, Gomez-Lopez N, Romero R, Stevenson DK, Aghaeepour N, Tarca AL, Costello JC, Sirota M. Golob JL, et al. Among authors: aghaeepour n. medRxiv [Preprint]. 2023 Apr 11:2023.03.07.23286920. doi: 10.1101/2023.03.07.23286920. medRxiv. 2023. Update in: Cell Rep Med. 2024 Jan 16;5(1):101350. doi: 10.1016/j.xcrm.2023.101350. PMID: 36945505 Free PMC article. Updated. Preprint.

111

Stabl: sparse and reliable biomarker discovery in predictive modeling of high-dimensional omic data.

Hédou J, Marić I, Bellan G, Einhaus J, Gaudillière DK, Ladant FX, Verdonk F, Stelzer IA, Feyaerts D, Tsai AS, Ganio EA, Sabayev M, Gillard J, Bonham TA, Sato M, Diop M, Angst MS, Stevenson D, Aghaeepour N, Montanari A, Gaudillière B. Hédou J, et al. Among authors: aghaeepour n. Res Sq [Preprint]. 2023 Feb 28:rs.3.rs-2609859. doi: 10.21203/rs.3.rs-2609859/v1. Res Sq. 2023. Update in: Nat Biotechnol. 2024 Oct;42(10):1581-1593. doi: 10.1038/s41587-023-02033-x. PMID: 36909508 Free PMC article. Updated. Preprint.

112

Changes in preterm birth and stillbirth during COVID-19 lockdowns in 26 countries.

Calvert C, Brockway MM, Zoega H, Miller JE, Been JV, Amegah AK, Racine-Poon A, Oskoui SE, Abok II, Aghaeepour N, Akwaowo CD, Alshaikh BN, Ayede AI, Bacchini F, Barekatain B, Barnes R, Bebak K, Berard A, Bhutta ZA, Brook JR, Bryan LR, Cajachagua-Torres KN, Campbell-Yeo M, Chu DT, Connor KL, Cornette L, Cortés S, Daly M, Debauche C, Dedeke IOF, Einarsdóttir K, Engjom H, Estrada-Gutierrez G, Fantasia I, Fiorentino NM, Franklin M, Fraser A, Gachuno OW, Gallo LA, Gissler M, Håberg SE, Habibelahi A, Häggström J, Hookham L, Hui L, Huicho L, Hunter KJ, Huq S, Kc A, Kadambari S, Kelishadi R, Khalili N, Kippen J, Le Doare K, Llorca J, Magee LA, Magnus MC, Man KKC, Mburugu PM, Mediratta RP, Morris AD, Muhajarine N, Mulholland RH, Bonnard LN, Nakibuuka V, Nassar N, Nyadanu SD, Oakley L, Oladokun A, Olayemi OO, Olutekunbi OA, Oluwafemi RO, Ogunkunle TO, Orton C, Örtqvist AK, Ouma J, Oyapero O, Palmer KR, Pedersen LH, Pereira G, Pereyra I, Philip RK, Pruski D, Przybylski M, Quezada-Pinedo HG, Regan AK, Rhoda NR, Rihs TA, Riley T, Rocha TAH, Rolnik DL, Saner C, Schneuer FJ, Souter VL, Stephansson O, Sun S, Swift EM, Szabó M, Temmerman M, Tooke L, Urquia ML, von Dadelszen P, Wellenius GA, … See abstract for full author list ➔ Calvert C, et al. Among authors: aghaeepour n. Nat Hum Behav. 2023 Apr;7(4):529-544. doi: 10.1038/s41562-023-01522-y. Epub 2023 Feb 27. Nat Hum Behav. 2023. PMID: 36849590 Free PMC article.

113

Data-driven longitudinal characterization of neonatal health and morbidity.

De Francesco D, Reiss JD, Roger J, Tang AS, Chang AL, Becker M, Phongpreecha T, Espinosa C, Morin S, Berson E, Thuraiappah M, Le BL, Ravindra NG, Payrovnaziri SN, Mataraso S, Kim Y, Xue L, Rosenstein MG, Oskotsky T, Marić I, Gaudilliere B, Carvalho B, Bateman BT, Angst MS, Prince LS, Blumenfeld YJ, Benitz WE, Fuerch JH, Shaw GM, Sylvester KG, Stevenson DK, Sirota M, Aghaeepour N. De Francesco D, et al. Among authors: aghaeepour n. Sci Transl Med. 2023 Feb 15;15(683):eadc9854. doi: 10.1126/scitranslmed.adc9854. Epub 2023 Feb 15. Sci Transl Med. 2023. PMID: 36791208 Free PMC article.

114

Towards multiomic analysis of oral mucosal pathologies.

Einhaus J, Han X, Feyaerts D, Sunwoo J, Gaudilliere B, Ahmad SH, Aghaeepour N, Bruckman K, Ojcius D, Schürch CM, Gaudilliere DK. Einhaus J, et al. Among authors: aghaeepour n. Semin Immunopathol. 2023 Jan;45(1):111-123. doi: 10.1007/s00281-022-00982-0. Epub 2023 Feb 15. Semin Immunopathol. 2023. PMID: 36790488 Free PMC article. Review.

115

Sp3 is essential for normal lung morphogenesis and cell cycle progression during mouse embryonic development.

McCoy AM, Lakhdari O, Shome S, Caoili K, Hernandez GE, Aghaeepour N, Butcher LD, Fisch K, Prince LS. McCoy AM, et al. Among authors: aghaeepour n. Development. 2023 Mar 1;150(5):dev200839. doi: 10.1242/dev.200839. Epub 2023 Mar 3. Development. 2023. PMID: 36762637 Free PMC article.

116

Prediction of neuropathologic lesions from clinical data.

Phongpreecha T, Cholerton B, Bukhari S, Chang AL, De Francesco D, Thuraiappah M, Godrich D, Perna A, Becker MG, Ravindra NG, Espinosa C, Kim Y, Berson E, Mataraso S, Sha SJ, Fox EJ, Montine KS, Baker LD, Craft S, White L, Poston KL, Beecham G, Aghaeepour N, Montine TJ. Phongpreecha T, et al. Among authors: aghaeepour n. Alzheimers Dement. 2023 Jul;19(7):3005-3018. doi: 10.1002/alz.12921. Epub 2023 Jan 21. Alzheimers Dement. 2023. PMID: 36681388 Free PMC article.

117

Early response evaluation by single cell signaling profiling in acute myeloid leukemia.

Tislevoll BS, Hellesøy M, Fagerholt OHE, Gullaksen SE, Srivastava A, Birkeland E, Kleftogiannis D, Ayuda-Durán P, Piechaczyk L, Tadele DS, Skavland J, Baliakas P, Hovland R, Andresen V, Seternes OM, Tvedt THA, Aghaeepour N, Gavasso S, Porkka K, Jonassen I, Fløisand Y, Enserink J, Blaser N, Gjertsen BT. Tislevoll BS, et al. Among authors: aghaeepour n. Nat Commun. 2023 Jan 7;14(1):115. doi: 10.1038/s41467-022-35624-4. Nat Commun. 2023. PMID: 36611026 Free PMC article.

118

Revealing the impact of lifestyle stressors on the risk of adverse pregnancy outcomes with multitask machine learning.

Becker M, Dai J, Chang AL, Feyaerts D, Stelzer IA, Zhang M, Berson E, Saarunya G, De Francesco D, Espinosa C, Kim Y, Marić I, Mataraso S, Payrovnaziri SN, Phongpreecha T, Ravindra NG, Shome S, Tan Y, Thuraiappah M, Xue L, Mayo JA, Quaintance CC, Laborde A, King LS, Dhabhar FS, Gotlib IH, Wong RJ, Angst MS, Shaw GM, Stevenson DK, Gaudilliere B, Aghaeepour N. Becker M, et al. Among authors: aghaeepour n. Front Pediatr. 2022 Dec 13;10:933266. doi: 10.3389/fped.2022.933266. eCollection 2022. Front Pediatr. 2022. PMID: 36582513 Free PMC article.

119

Early prediction and longitudinal modeling of preeclampsia from multiomics.

Marić I, Contrepois K, Moufarrej MN, Stelzer IA, Feyaerts D, Han X, Tang A, Stanley N, Wong RJ, Traber GM, Ellenberger M, Chang AL, Fallahzadeh R, Nassar H, Becker M, Xenochristou M, Espinosa C, De Francesco D, Ghaemi MS, Costello EK, Culos A, Ling XB, Sylvester KG, Darmstadt GL, Winn VD, Shaw GM, Relman DA, Quake SR, Angst MS, Snyder MP, Stevenson DK, Gaudilliere B, Aghaeepour N. Marić I, et al. Among authors: aghaeepour n. Patterns (N Y). 2022 Dec 9;3(12):100655. doi: 10.1016/j.patter.2022.100655. eCollection 2022 Dec 9. Patterns (N Y). 2022. PMID: 36569558 Free PMC article.

120

In-silico generation of high-dimensional immune response data in patients using a deep neural network.

Fallahzadeh R, Bidoki NH, Stelzer IA, Becker M, Marić I, Chang AL, Culos A, Phongpreecha T, Xenochristou M, De Francesco D, Espinosa C, Berson E, Verdonk F, Angst MS, Gaudilliere B, Aghaeepour N. Fallahzadeh R, et al. Among authors: aghaeepour n. Cytometry A. 2023 May;103(5):392-404. doi: 10.1002/cyto.a.24709. Epub 2022 Dec 27. Cytometry A. 2023. PMID: 36507780 Free PMC article.

121

The Childhood Acute Illness and Nutrition (CHAIN) network nested case-cohort study protocol: a multi-omics approach to understanding mortality among children in sub-Saharan Africa and South Asia.

Njunge JM, Tickell K, Diallo AH, Sayeem Bin Shahid ASM, Gazi MA, Saleem A, Kazi Z, Ali S, Tigoi C, Mupere E, Lancioni CL, Yoshioka E, Chisti MJ, Mburu M, Ngari M, Ngao N, Gichuki B, Omer E, Gumbi W, Singa B, Bandsma R, Ahmed T, Voskuijl W, Williams TN, Macharia A, Makale J, Mitchel A, Williams J, Gogain J, Janjic N, Mandal R, Wishart DS, Wu H, Xia L, Routledge M, Gong YY, Espinosa C, Aghaeepour N, Liu J, Houpt E, Lawley TD, Browne H, Shao Y, Rwigi D, Kariuki K, Kaburu T, Uhlig HH, Gartner L, Jones K, Koulman A, Walson J, Berkley J. Njunge JM, et al. Among authors: aghaeepour n. Gates Open Res. 2022 Nov 3;6:77. doi: 10.12688/gatesopenres.13635.2. eCollection 2022. Gates Open Res. 2022. PMID: 36415883 Free PMC article.

122

Author Correction: Prediction of gestational age using urinary metabolites in term and preterm pregnancies.

Contrepois K, Chen S, Ghaemi MS, Wong RJ, Jehan F, Sazawal S, Baqui AH, Stringer JSA, Rahman A, Nisar MI, Dhingra U, Khanam R, Ilyas M, Dutta A, Mehmood U, Deb S, Hotwani A, Ali SM, Rahman S, Nizar A, Ame SM, Muhammad S, Chauhan A, Khan W, Raqib R, Das S, Ahmed S, Hasan T, Khalid J, Juma MH, Chowdhury NH, Kabir F, Aftab F, Quaiyum A, Manu A, Yoshida S, Bahl R, Pervin J, Price JT, Rahman M, Kasaro MP, Litch JA, Musonda P, Vwalika B, Shaw G, Stevenson DK, Aghaeepour N, Snyder MP. Contrepois K, et al. Among authors: aghaeepour n. Sci Rep. 2022 Nov 17;12(1):19753. doi: 10.1038/s41598-022-23715-7. Sci Rep. 2022. PMID: 36396676 Free PMC article. No abstract available.

123

Omics approaches: interactions at the maternal-fetal interface and origins of child health and disease.

Ozen M, Aghaeepour N, Marić I, Wong RJ, Stevenson DK, Jantzie LL. Ozen M, et al. Among authors: aghaeepour n. Pediatr Res. 2023 Jan;93(2):366-375. doi: 10.1038/s41390-022-02335-x. Epub 2022 Oct 10. Pediatr Res. 2023. PMID: 36216868 Free PMC article. Review.

124

Integrated plasma proteomic and single-cell immune signaling network signatures demarcate mild, moderate, and severe COVID-19.

Feyaerts D, Hédou J, Gillard J, Chen H, Tsai ES, Peterson LS, Ando K, Manohar M, Do E, Dhondalay GKR, Fitzpatrick J, Artandi M, Chang I, Snow TT, Chinthrajah RS, Warren CM, Wittman R, Meyerowitz JG, Ganio EA, Stelzer IA, Han X, Verdonk F, Gaudillière DK, Mukherjee N, Tsai AS, Rumer KK, Jacobsen DR, Bjornson-Hooper ZB, Jiang S, Saavedra SF, Valdés Ferrer SI, Kelly JD, Furman D, Aghaeepour N, Angst MS, Boyd SD, Pinsky BA, Nolan GP, Nadeau KC, Gaudillière B, McIlwain DR. Feyaerts D, et al. Among authors: aghaeepour n. Cell Rep Med. 2022 Jul 19;3(7):100680. doi: 10.1016/j.xcrm.2022.100680. Epub 2022 Jun 28. Cell Rep Med. 2022. PMID: 35839768 Free PMC article.

125

Multiomics, artificial intelligence, and precision medicine in perinatology.

Pammi M, Aghaeepour N, Neu J. Pammi M, et al. Among authors: aghaeepour n. Pediatr Res. 2023 Jan;93(2):308-315. doi: 10.1038/s41390-022-02181-x. Epub 2022 Jul 8. Pediatr Res. 2023. PMID: 35804156 Free PMC article. Review.

126

HMOX1 Genetic Polymorphisms Display Ancestral Diversity and May Be Linked to Hypertensive Disorders in Pregnancy.

Sun T, Cruz GI, Mousavi N, Marić I, Brewer A, Wong RJ, Aghaeepour N, Sayed N, Wu JC, Stevenson DK, Leonard SA, Gymrek M, Winn VD. Sun T, et al. Among authors: aghaeepour n. Reprod Sci. 2022 Dec;29(12):3465-3476. doi: 10.1007/s43032-022-01001-1. Epub 2022 Jun 13. Reprod Sci. 2022. PMID: 35697922 Free PMC article.

127

Signature for Pain Recovery IN Teens (SPRINT): protocol for a multisite prospective signature study in chronic musculoskeletal pain.

Simons L, Moayedi M, Coghill RC, Stinson J, Angst MS, Aghaeepour N, Gaudilliere B, King CD, López-Solà M, Hoeppli ME, Biggs E, Ganio E, Williams SE, Goldschneider KR, Campbell F, Ruskin D, Krane EJ, Walker S, Rush G, Heirich M. Simons L, et al. Among authors: aghaeepour n. BMJ Open. 2022 Jun 8;12(6):e061548. doi: 10.1136/bmjopen-2022-061548. BMJ Open. 2022. PMID: 35676017 Free PMC article.

128

Prediction of gestational age using urinary metabolites in term and preterm pregnancies.

Contrepois K, Chen S, Ghaemi MS, Wong RJ, Jehan F, Sazawal S, Baqui AH, Stringer JSA, Rahman A, Nisar MI, Dhingra U, Khanam R, Ilyas M, Dutta A, Mehmood U, Deb S, Hotwani A, Ali SM, Rahman S, Nizar A, Ame SM, Muhammad S, Chauhan A, Khan W, Raqib R, Das S, Ahmed S, Hasan T, Khalid J, Juma MH, Chowdhury NH, Kabir F, Aftab F, Quaiyum A, Manu A, Yoshida S, Bahl R, Pervin J, Price JT, Rahman M, Kasaro MP, Litch JA, Musonda P, Vwalika B; Alliance for Maternal and Newborn Health Improvement (AMANHI); Global Alliance to Prevent Prematurity and Stillbirth (GAPPS); Shaw G, Stevenson DK, Aghaeepour N, Snyder MP. Contrepois K, et al. Among authors: aghaeepour n. Sci Rep. 2022 May 16;12(1):8033. doi: 10.1038/s41598-022-11866-6. Sci Rep. 2022. PMID: 35577875 Free PMC article.

129

Leukocyte telomere dynamics across gestation in uncomplicated pregnancies and associations with stress.

Panelli DM, Leonard SA, Wong RJ, Becker M, Mayo JA, Wu E, Girsen AI, Gotlib IH, Aghaeepour N, Druzin ML, Shaw GM, Stevenson DK, Bianco K. Panelli DM, et al. Among authors: aghaeepour n. BMC Pregnancy Childbirth. 2022 May 2;22(1):381. doi: 10.1186/s12884-022-04693-0. BMC Pregnancy Childbirth. 2022. PMID: 35501726 Free PMC article.

130

A data-driven health index for neonatal morbidities.

De Francesco D, Blumenfeld YJ, Marić I, Mayo JA, Chang AL, Fallahzadeh R, Phongpreecha T, Butwick AJ, Xenochristou M, Phibbs CS, Bidoki NH, Becker M, Culos A, Espinosa C, Liu Q, Sylvester KG, Gaudilliere B, Angst MS, Stevenson DK, Shaw GM, Aghaeepour N. De Francesco D, et al. Among authors: aghaeepour n. iScience. 2022 Mar 22;25(4):104143. doi: 10.1016/j.isci.2022.104143. eCollection 2022 Apr 15. iScience. 2022. PMID: 35402862 Free PMC article.

131

Stress and Its Consequences-Biological Strain.

Stevenson DK, Gotlib IH, Buthmann JL, Marié I, Aghaeepour N, Gaudilliere B, Angst MS, Darmstadt GL, Druzin ML, Wong RJ, Shaw GM, Katz M. Stevenson DK, et al. Among authors: aghaeepour n. Am J Perinatol. 2024 Jul;41(9):1282-1284. doi: 10.1055/a-1798-1602. Epub 2022 Mar 15. Am J Perinatol. 2024. PMID: 35292943

132

Increases in ambient air pollutants during pregnancy are linked to increases in methylation of IL4, IL10, and IFNγ.

Aguilera J, Han X, Cao S, Balmes J, Lurmann F, Tyner T, Lutzker L, Noth E, Hammond SK, Sampath V, Burt T, Utz PJ, Khatri P, Aghaeepour N, Maecker H, Prunicki M, Nadeau K. Aguilera J, et al. Among authors: aghaeepour n. Clin Epigenetics. 2022 Mar 14;14(1):40. doi: 10.1186/s13148-022-01254-2. Clin Epigenetics. 2022. PMID: 35287715 Free PMC article.

133

Objective Activity Parameters Track Patient-specific Physical Recovery Trajectories After Surgery and Link With Individual Preoperative Immune States.

Fallahzadeh R, Verdonk F, Ganio E, Culos A, Stanley N, Maric I, Chang AL, Becker M, Phongpreecha T, Xenochristou M, De Francesco D, Espinosa C, Gao X, Tsai A, Sultan P, Tingle M, Amanatullah DF, Huddleston JI, Goodman SB, Gaudilliere B, Angst MS, Aghaeepour N. Fallahzadeh R, et al. Among authors: aghaeepour n. Ann Surg. 2023 Mar 1;277(3):e503-e512. doi: 10.1097/SLA.0000000000005250. Epub 2021 Oct 8. Ann Surg. 2023. PMID: 35129529 Free PMC article.

134

Perinatal infection, inflammation, preterm birth, and brain injury: A review with proposals for future investigations.

Reiss JD, Peterson LS, Nesamoney SN, Chang AL, Pasca AM, Marić I, Shaw GM, Gaudilliere B, Wong RJ, Sylvester KG, Bonifacio SL, Aghaeepour N, Gibbs RS, Stevenson DK. Reiss JD, et al. Among authors: aghaeepour n. Exp Neurol. 2022 May;351:113988. doi: 10.1016/j.expneurol.2022.113988. Epub 2022 Jan 23. Exp Neurol. 2022. PMID: 35081400 Review.

135

Integrated Single-cell and Plasma Proteomic Modeling to Predict Surgical Site Complications: A Prospective Cohort Study.

Rumer KK, Hedou J, Tsai A, Einhaus J, Verdonk F, Stanley N, Choisy B, Ganio E, Bonham A, Jacobsen D, Warrington B, Gao X, Tingle M, McAllister TN, Fallahzadeh R, Feyaerts D, Stelzer I, Gaudilliere D, Ando K, Shelton A, Morris A, Kebebew E, Aghaeepour N, Kin C, Angst MS, Gaudilliere B. Rumer KK, et al. Among authors: aghaeepour n. Ann Surg. 2022 Mar 1;275(3):582-590. doi: 10.1097/SLA.0000000000005348. Ann Surg. 2022. PMID: 34954754 Free PMC article.

136

Single-synapse analyses of Alzheimer's disease implicate pathologic tau, DJ1, CD47, and ApoE.

Phongpreecha T, Gajera CR, Liu CC, Vijayaragavan K, Chang AL, Becker M, Fallahzadeh R, Fernandez R, Postupna N, Sherfield E, Tebaykin D, Latimer C, Shively CA, Register TC, Craft S, Montine KS, Fox EJ, Poston KL, Keene CD, Angelo M, Bendall SC, Aghaeepour N, Montine TJ. Phongpreecha T, et al. Among authors: aghaeepour n. Sci Adv. 2021 Dec 17;7(51):eabk0473. doi: 10.1126/sciadv.abk0473. Epub 2021 Dec 15. Sci Adv. 2021. PMID: 34910503 Free PMC article.

137

Harnessing the Potential of Multiomics Studies for Precision Medicine in Infectious Disease.

Ward RA, Aghaeepour N, Bhattacharyya RP, Clish CB, Gaudillière B, Hacohen N, Mansour MK, Mudd PA, Pasupneti S, Presti RM, Rhee EP, Sen P, Spec A, Tam JM, Villani AC, Woolley AE, Hsu JL, Vyas JM. Ward RA, et al. Among authors: aghaeepour n. Open Forum Infect Dis. 2021 Sep 25;8(11):ofab483. doi: 10.1093/ofid/ofab483. eCollection 2021 Nov. Open Forum Infect Dis. 2021. PMID: 34805429 Free PMC article. Review.

138

Human influenza virus challenge identifies cellular correlates of protection for oral vaccination.

McIlwain DR, Chen H, Rahil Z, Bidoki NH, Jiang S, Bjornson Z, Kolhatkar NS, Martinez CJ, Gaudillière B, Hedou J, Mukherjee N, Schürch CM, Trejo A, Affrime M, Bock B, Kim K, Liebowitz D, Aghaeepour N, Tucker SN, Nolan GP. McIlwain DR, et al. Among authors: aghaeepour n. Cell Host Microbe. 2021 Dec 8;29(12):1828-1837.e5. doi: 10.1016/j.chom.2021.10.009. Epub 2021 Nov 15. Cell Host Microbe. 2021. PMID: 34784508 Free PMC article.

139

Mortality Risk Among Patients With COVID-19 Prescribed Selective Serotonin Reuptake Inhibitor Antidepressants.

Oskotsky T, Maric I, Tang A, Oskotsky B, Wong RJ, Aghaeepour N, Sirota M, Stevenson DK. Oskotsky T, et al. Among authors: aghaeepour n. JAMA Netw Open. 2021 Nov 1;4(11):e2133090. doi: 10.1001/jamanetworkopen.2021.33090. JAMA Netw Open. 2021. PMID: 34779847 Free PMC article.

140

Newborn screen metabolic panels reflect the impact of common disorders of pregnancy.

Reiss JD, Chang AL, Mayo JA, Bianco K, Lee HC, Stevenson DK, Shaw GM, Aghaeepour N, Sylvester KG. Reiss JD, et al. Among authors: aghaeepour n. Pediatr Res. 2022 Aug;92(2):490-497. doi: 10.1038/s41390-021-01753-7. Epub 2021 Oct 20. Pediatr Res. 2022. PMID: 34671094 Free PMC article.

141

Black swans and ambitious overgeneralization in newborn intensive care.

Stevenson DK, Wong RJ, Shaw GM, Aghaeepour N, Maric I, Prince LS, Reiss JD, Katz M. Stevenson DK, et al. Among authors: aghaeepour n. Pediatr Res. 2022 Aug;92(2):357-359. doi: 10.1038/s41390-021-01771-5. Epub 2021 Oct 2. Pediatr Res. 2022. PMID: 34601493 No abstract available.

142

A Peripheral Immune Signature of Labor Induction.

Ando K, Hédou JJ, Feyaerts D, Han X, Ganio EA, Tsai ES, Peterson LS, Verdonk F, Tsai AS, Marić I, Wong RJ, Angst MS, Aghaeepour N, Stevenson DK, Blumenfeld YJ, Sultan P, Carvalho B, Stelzer IA, Gaudillière B. Ando K, et al. Among authors: aghaeepour n. Front Immunol. 2021 Sep 9;12:725989. doi: 10.3389/fimmu.2021.725989. eCollection 2021. Front Immunol. 2021. PMID: 34566984 Free PMC article.

143

Measuring the human immune response to surgery: multiomics for the prediction of postoperative outcomes.

Verdonk F, Einhaus J, Tsai AS, Hedou J, Choisy B, Gaudilliere D, Kin C, Aghaeepour N, Angst MS, Gaudilliere B. Verdonk F, et al. Among authors: aghaeepour n. Curr Opin Crit Care. 2021 Dec 1;27(6):717-725. doi: 10.1097/MCC.0000000000000883. Curr Opin Crit Care. 2021. PMID: 34545029 Free PMC article. Review.

144

Single-Cell Analysis of the Neonatal Immune System Across the Gestational Age Continuum.

Peterson LS, Hedou J, Ganio EA, Stelzer IA, Feyaerts D, Harbert E, Adusumelli Y, Ando K, Tsai ES, Tsai AS, Han X, Ringle M, Houghteling P, Reiss JD, Lewis DB, Winn VD, Angst MS, Aghaeepour N, Stevenson DK, Gaudilliere B. Peterson LS, et al. Among authors: aghaeepour n. Front Immunol. 2021 Aug 23;12:714090. doi: 10.3389/fimmu.2021.714090. eCollection 2021. Front Immunol. 2021. PMID: 34497610 Free PMC article.

145

Crowdsourcing assessment of maternal blood multi-omics for predicting gestational age and preterm birth.

Tarca AL, Pataki BÁ, Romero R, Sirota M, Guan Y, Kutum R, Gomez-Lopez N, Done B, Bhatti G, Yu T, Andreoletti G, Chaiworapongsa T; DREAM Preterm Birth Prediction Challenge Consortium; Hassan SS, Hsu CD, Aghaeepour N, Stolovitzky G, Csabai I, Costello JC. Tarca AL, et al. Among authors: aghaeepour n. Cell Rep Med. 2021 Jun 15;2(6):100323. doi: 10.1016/j.xcrm.2021.100323. eCollection 2021 Jun 15. Cell Rep Med. 2021. PMID: 34195686 Free PMC article.

146

Improvement in Glucose Regulation Using a Digital Tracker and Continuous Glucose Monitoring in Healthy Adults and Those with Type 2 Diabetes.

Dehghani Zahedani A, Shariat Torbaghan S, Rahili S, Karlin K, Scilley D, Thakkar R, Saberi M, Hashemi N, Perelman D, Aghaeepour N, McLaughlin T, Snyder MP. Dehghani Zahedani A, et al. Among authors: aghaeepour n. Diabetes Ther. 2021 Jul;12(7):1871-1886. doi: 10.1007/s13300-021-01081-3. Epub 2021 May 28. Diabetes Ther. 2021. PMID: 34047962 Free PMC article.

147

Use of Patient-Reported Outcome Measures to Assess Outpatient Postpartum Recovery: A Systematic Review.

Sultan P, Sharawi N, Blake L, Ando K, Sultan E, Aghaeepour N, Carvalho B, Sadana N. Sultan P, et al. Among authors: aghaeepour n. JAMA Netw Open. 2021 May 3;4(5):e2111600. doi: 10.1001/jamanetworkopen.2021.11600. JAMA Netw Open. 2021. PMID: 34042993 Free PMC article.

148

Deleterious and Protective Psychosocial and Stress-Related Factors Predict Risk of Spontaneous Preterm Birth.

Becker M, Mayo JA, Phogat NK, Quaintance CC, Laborde A, King L, Gotlib IH, Gaudilliere B, Angst MS, Shaw GM, Stevenson DK, Aghaeepour N, Dhabhar FS. Becker M, et al. Among authors: aghaeepour n. Am J Perinatol. 2023 Jan;40(1):74-88. doi: 10.1055/s-0041-1729162. Epub 2021 May 20. Am J Perinatol. 2023. PMID: 34015838 Free PMC article.

149

Integrated trajectories of the maternal metabolome, proteome, and immunome predict labor onset.

Stelzer IA, Ghaemi MS, Han X, Ando K, Hédou JJ, Feyaerts D, Peterson LS, Rumer KK, Tsai ES, Ganio EA, Gaudillière DK, Tsai AS, Choisy B, Gaigne LP, Verdonk F, Jacobsen D, Gavasso S, Traber GM, Ellenberger M, Stanley N, Becker M, Culos A, Fallahzadeh R, Wong RJ, Darmstadt GL, Druzin ML, Winn VD, Gibbs RS, Ling XB, Sylvester K, Carvalho B, Snyder MP, Shaw GM, Stevenson DK, Contrepois K, Angst MS, Aghaeepour N, Gaudillière B. Stelzer IA, et al. Among authors: aghaeepour n. Sci Transl Med. 2021 May 5;13(592):eabd9898. doi: 10.1126/scitranslmed.abd9898. Sci Transl Med. 2021. PMID: 33952678 Free PMC article.

150

Understanding how biologic and social determinants affect disparities in preterm birth and outcomes of preterm infants in the NICU.

Stevenson DK, Aghaeepour N, Maric I, Angst MS, Darmstadt GL, Druzin ML, Gaudilliere B, Ling XB, Moufarrej MN, Peterson LS, Quake SR, Relman DA, Snyder MP, Sylvester KG, Shaw GM, Wong RJ. Stevenson DK, et al. Among authors: aghaeepour n. Semin Perinatol. 2021 Jun;45(4):151408. doi: 10.1016/j.semperi.2021.151408. Epub 2021 Mar 24. Semin Perinatol. 2021. PMID: 33875265 Free PMC article.

151

High-dimensional profiling clusters asthma severity by lymphoid and non-lymphoid status.

Camiolo MJ, Zhou X, Oriss TB, Yan Q, Gorry M, Horne W, Trudeau JB, Scholl K, Chen W, Kolls JK, Ray P, Weisel FJ, Weisel NM, Aghaeepour N, Nadeau K, Wenzel SE, Ray A. Camiolo MJ, et al. Among authors: aghaeepour n. Cell Rep. 2021 Apr 13;35(2):108974. doi: 10.1016/j.celrep.2021.108974. Cell Rep. 2021. PMID: 33852838 Free PMC article.

152

Predicting Post-Liver Transplant Outcomes-Rise of the Machines or a Foggy Crystal Ball?

Vanneman MW, Fielding-Singh V, Aghaeepour N. Vanneman MW, et al. Among authors: aghaeepour n. J Cardiothorac Vasc Anesth. 2021 Jul;35(7):2070-2072. doi: 10.1053/j.jvca.2021.03.012. Epub 2021 Mar 13. J Cardiothorac Vasc Anesth. 2021. PMID: 33846080 No abstract available.

153

Proteomic signatures predict preeclampsia in individual cohorts but not across cohorts - implications for clinical biomarker studies.

Ghaemi MS, Tarca AL, Romero R, Stanley N, Fallahzadeh R, Tanada A, Culos A, Ando K, Han X, Blumenfeld YJ, Druzin ML, El-Sayed YY, Gibbs RS, Winn VD, Contrepois K, Ling XB, Wong RJ, Shaw GM, Stevenson DK, Gaudilliere B, Aghaeepour N, Angst MS. Ghaemi MS, et al. Among authors: aghaeepour n. J Matern Fetal Neonatal Med. 2022 Dec;35(25):5621-5628. doi: 10.1080/14767058.2021.1888915. Epub 2021 Mar 2. J Matern Fetal Neonatal Med. 2022. PMID: 33653202 Free PMC article.

154

Integrated plasma proteomic and single-cell immune signaling network signatures demarcate mild, moderate, and severe COVID-19.

Feyaerts D, Hédou J, Gillard J, Chen H, Tsai ES, Peterson LS, Ando K, Manohar M, Do E, Dhondalay GKR, Fitzpatrick J, Artandi M, Chang I, Snow TT, Chinthrajah RS, Warren CM, Wittman R, Meyerowitz JG, Ganio EA, Stelzer IA, Han X, Verdonk F, Gaudillière DK, Mukherjee N, Tsai AS, Rumer KK, Jiang S, Valdés Ferrer SI, Kelly JD, Furman D, Aghaeepour N, Angst MS, Boyd SD, Pinsky BA, Nolan GP, Nadeau KC, Gaudillière B, McIlwain DR. Feyaerts D, et al. Among authors: aghaeepour n. bioRxiv [Preprint]. 2021 Feb 10:2021.02.09.430269. doi: 10.1101/2021.02.09.430269. bioRxiv. 2021. Update in: Cell Rep Med. 2022 Jul 19;3(7):100680. doi: 10.1016/j.xcrm.2022.100680. PMID: 33594362 Free PMC article. Updated. Preprint.

155

Data-Driven Modeling of Pregnancy-Related Complications.

Espinosa C, Becker M, Marić I, Wong RJ, Shaw GM, Gaudilliere B, Aghaeepour N, Stevenson DK; Prematurity Research Center at Stanford. Espinosa C, et al. Among authors: aghaeepour n. Trends Mol Med. 2021 Aug;27(8):762-776. doi: 10.1016/j.molmed.2021.01.007. Epub 2021 Feb 8. Trends Mol Med. 2021. PMID: 33573911 Free PMC article. Review.

156

Risk assessment analysis for maternal autoantibody-related autism (MAR-ASD): a subtype of autism.

Ramirez-Celis A, Becker M, Nuño M, Schauer J, Aghaeepour N, Van de Water J. Ramirez-Celis A, et al. Among authors: aghaeepour n. Mol Psychiatry. 2021 May;26(5):1551-1560. doi: 10.1038/s41380-020-00998-8. Epub 2021 Jan 22. Mol Psychiatry. 2021. PMID: 33483694 Free PMC article.

157

Early prediction of preeclampsia via machine learning.

Marić I, Tsur A, Aghaeepour N, Montanari A, Stevenson DK, Shaw GM, Winn VD. Marić I, et al. Among authors: aghaeepour n. Am J Obstet Gynecol MFM. 2020 May;2(2):100100. doi: 10.1016/j.ajogmf.2020.100100. Epub 2020 Mar 14. Am J Obstet Gynecol MFM. 2020. PMID: 33345966

158

Multiomics Characterization of Preterm Birth in Low- and Middle-Income Countries.

Jehan F, Sazawal S, Baqui AH, Nisar MI, Dhingra U, Khanam R, Ilyas M, Dutta A, Mitra DK, Mehmood U, Deb S, Mahmud A, Hotwani A, Ali SM, Rahman S, Nizar A, Ame SM, Moin MI, Muhammad S, Chauhan A, Begum N, Khan W, Das S, Ahmed S, Hasan T, Khalid J, Rizvi SJR, Juma MH, Chowdhury NH, Kabir F, Aftab F, Quaiyum A, Manu A, Yoshida S, Bahl R, Rahman A, Pervin J, Winston J, Musonda P, Stringer JSA, Litch JA, Ghaemi MS, Moufarrej MN, Contrepois K, Chen S, Stelzer IA, Stanley N, Chang AL, Hammad GB, Wong RJ, Liu C, Quaintance CC, Culos A, Espinosa C, Xenochristou M, Becker M, Fallahzadeh R, Ganio E, Tsai AS, Gaudilliere D, Tsai ES, Han X, Ando K, Tingle M, Maric I, Wise PH, Winn VD, Druzin ML, Gibbs RS, Darmstadt GL, Murray JC, Shaw GM, Stevenson DK, Snyder MP, Quake SR, Angst MS, Gaudilliere B, Aghaeepour N; Alliance for Maternal and Newborn Health Improvement, the Global Alliance to Prevent Prematurity and Stillbirth, and the Prematurity Research Center at Stanford University. Jehan F, et al. Among authors: aghaeepour n. JAMA Netw Open. 2020 Dec 1;3(12):e2029655. doi: 10.1001/jamanetworkopen.2020.29655. JAMA Netw Open. 2020. PMID: 33337494 Free PMC article.

159

Integration of mechanistic immunological knowledge into a machine learning pipeline improves predictions.

Culos A, Tsai AS, Stanley N, Becker M, Ghaemi MS, McIlwain DR, Fallahzadeh R, Tanada A, Nassar H, Espinosa C, Xenochristou M, Ganio E, Peterson L, Han X, Stelzer IA, Ando K, Gaudilliere D, Phongpreecha T, Marić I, Chang AL, Shaw GM, Stevenson DK, Bendall S, Davis KL, Fantl W, Nolan GP, Hastie T, Tibshirani R, Angst MS, Gaudilliere B, Aghaeepour N. Culos A, et al. Among authors: aghaeepour n. Nat Mach Intell. 2020 Oct;2(10):619-628. doi: 10.1038/s42256-020-00232-8. Epub 2020 Oct 12. Nat Mach Intell. 2020. PMID: 33294774 Free PMC article.

160

Single-cell peripheral immunoprofiling of Alzheimer's and Parkinson's diseases.

Phongpreecha T, Fernandez R, Mrdjen D, Culos A, Gajera CR, Wawro AM, Stanley N, Gaudilliere B, Poston KL, Aghaeepour N, Montine TJ. Phongpreecha T, et al. Among authors: aghaeepour n. Sci Adv. 2020 Nov 25;6(48):eabd5575. doi: 10.1126/sciadv.abd5575. Print 2020 Nov. Sci Adv. 2020. PMID: 33239300 Free PMC article.

161

Mid-gestation serum lipidomic profile associations with spontaneous preterm birth are influenced by body mass index.

Borkowski K, Newman JW, Aghaeepour N, Mayo JA, Blazenović I, Fiehn O, Stevenson DK, Shaw GM, Carmichael SL. Borkowski K, et al. Among authors: aghaeepour n. PLoS One. 2020 Nov 17;15(11):e0239115. doi: 10.1371/journal.pone.0239115. eCollection 2020. PLoS One. 2020. PMID: 33201881 Free PMC article.

162

Landscape of coordinated immune responses to H1N1 challenge in humans.

Rahil Z, Leylek R, Schürch CM, Chen H, Bjornson-Hooper Z, Christensen SR, Gherardini PF, Bhate SS, Spitzer MH, Fragiadakis GK, Mukherjee N, Kim N, Jiang S, Yo J, Gaudilliere B, Affrime M, Bock B, Hensley SE, Idoyaga J, Aghaeepour N, Kim K, Nolan GP, McIlwain DR. Rahil Z, et al. Among authors: aghaeepour n. J Clin Invest. 2020 Nov 2;130(11):5800-5816. doi: 10.1172/JCI137265. J Clin Invest. 2020. PMID: 33044226 Free PMC article. Clinical Trial.

163

Multivariate prediction of dementia in Parkinson's disease.

Phongpreecha T, Cholerton B, Mata IF, Zabetian CP, Poston KL, Aghaeepour N, Tian L, Quinn JF, Chung KA, Hiller AL, Hu SC, Edwards KL, Montine TJ. Phongpreecha T, et al. Among authors: aghaeepour n. NPJ Parkinsons Dis. 2020 Aug 25;6:20. doi: 10.1038/s41531-020-00121-2. eCollection 2020. NPJ Parkinsons Dis. 2020. PMID: 32885039 Free PMC article.

164

Author Correction: Preferential inhibition of adaptive immune system dynamics by glucocorticoids in patients after acute surgical trauma.

Ganio EA, Stanley N, Lindberg-Larsen V, Einhaus J, Tsai AS, Verdonk F, Culos A, Ghaemi S, Rumer KK, Stelzer IA, Gaudilliere D, Tsai E, Fallahzadeh R, Choisy B, Kehlet H, Aghaeepour N, Angst MS, Gaudilliere B. Ganio EA, et al. Among authors: aghaeepour n. Nat Commun. 2020 Sep 3;11(1):4495. doi: 10.1038/s41467-020-18410-y. Nat Commun. 2020. PMID: 32883978 Free PMC article.

165

Systematic Immunophenotyping Reveals Sex-Specific Responses After Painful Injury in Mice.

Tawfik VL, Huck NA, Baca QJ, Ganio EA, Haight ES, Culos A, Ghaemi S, Phongpreecha T, Angst MS, Clark JD, Aghaeepour N, Gaudilliere B. Tawfik VL, et al. Among authors: aghaeepour n. Front Immunol. 2020 Jul 29;11:1652. doi: 10.3389/fimmu.2020.01652. eCollection 2020. Front Immunol. 2020. PMID: 32849569 Free PMC article.

166

A longitudinal study of the post-stroke immune response and cognitive functioning: the StrokeCog study protocol.

Drag LL, Mlynash M, Nassar H, Osborn E, Kim DE, Angst MS, Aghaeepour N, Buckwalter M, Lansberg MG. Drag LL, et al. Among authors: aghaeepour n. BMC Neurol. 2020 Aug 26;20(1):313. doi: 10.1186/s12883-020-01897-9. BMC Neurol. 2020. PMID: 32847540 Free PMC article.

167

VoPo leverages cellular heterogeneity for predictive modeling of single-cell data.

Stanley N, Stelzer IA, Tsai AS, Fallahzadeh R, Ganio E, Becker M, Phongpreecha T, Nassar H, Ghaemi S, Maric I, Culos A, Chang AL, Xenochristou M, Han X, Espinosa C, Rumer K, Peterson L, Verdonk F, Gaudilliere D, Tsai E, Feyaerts D, Einhaus J, Ando K, Wong RJ, Obermoser G, Shaw GM, Stevenson DK, Angst MS, Gaudilliere B, Aghaeepour N. Stanley N, et al. Among authors: aghaeepour n. Nat Commun. 2020 Jul 27;11(1):3738. doi: 10.1038/s41467-020-17569-8. Nat Commun. 2020. PMID: 32719375 Free PMC article.

168

Preferential inhibition of adaptive immune system dynamics by glucocorticoids in patients after acute surgical trauma.

Ganio EA, Stanley N, Lindberg-Larsen V, Einhaus J, Tsai AS, Verdonk F, Culos A, Ghaemi S, Rumer KK, Stelzer IA, Gaudilliere D, Tsai E, Fallahzadeh R, Choisy B, Kehlet H, Aghaeepour N, Angst MS, Gaudilliere B. Ganio EA, et al. Among authors: aghaeepour n. Nat Commun. 2020 Jul 27;11(1):3737. doi: 10.1038/s41467-020-17565-y. Nat Commun. 2020. PMID: 32719355 Free PMC article. Clinical Trial.

169

Discovery and validation of biomarkers to aid the development of safe and effective pain therapeutics: challenges and opportunities.

Davis KD, Aghaeepour N, Ahn AH, Angst MS, Borsook D, Brenton A, Burczynski ME, Crean C, Edwards R, Gaudilliere B, Hergenroeder GW, Iadarola MJ, Iyengar S, Jiang Y, Kong JT, Mackey S, Saab CY, Sang CN, Scholz J, Segerdahl M, Tracey I, Veasley C, Wang J, Wager TD, Wasan AD, Pelleymounter MA. Davis KD, et al. Among authors: aghaeepour n. Nat Rev Neurol. 2020 Jul;16(7):381-400. doi: 10.1038/s41582-020-0362-2. Epub 2020 Jun 15. Nat Rev Neurol. 2020. PMID: 32541893 Free PMC article. Review.

170

Towards personalized medicine in maternal and child health: integrating biologic and social determinants.

Stevenson DK, Wong RJ, Aghaeepour N, Maric I, Angst MS, Contrepois K, Darmstadt GL, Druzin ML, Eisenberg ML, Gaudilliere B, Gibbs RS, Gotlib IH, Gould JB, Lee HC, Ling XB, Mayo JA, Moufarrej MN, Quaintance CC, Quake SR, Relman DA, Sirota M, Snyder MP, Sylvester KG, Hao S, Wise PH, Shaw GM, Katz M. Stevenson DK, et al. Among authors: aghaeepour n. Pediatr Res. 2021 Jan;89(2):252-258. doi: 10.1038/s41390-020-0981-8. Epub 2020 May 26. Pediatr Res. 2021. PMID: 32454518 Free PMC article. No abstract available.

171

Effects of Selective Exclusion of Patients on Preterm Birth Test Performance.

McElrath TF, Cantonwine D, Stevenson DK, Shaw GM, Aghaeepour N, Quake S. McElrath TF, et al. Among authors: aghaeepour n. Obstet Gynecol. 2020 May;135(5):1228-1229. doi: 10.1097/AOG.0000000000003855. Obstet Gynecol. 2020. PMID: 32332399 No abstract available.

172

Changes in pregnancy-related serum biomarkers early in gestation are associated with later development of preeclampsia.

Hao S, You J, Chen L, Zhao H, Huang Y, Zheng L, Tian L, Maric I, Liu X, Li T, Bianco YK, Winn VD, Aghaeepour N, Gaudilliere B, Angst MS, Zhou X, Li YM, Mo L, Wong RJ, Shaw GM, Stevenson DK, Cohen HJ, Mcelhinney DB, Sylvester KG, Ling XB. Hao S, et al. Among authors: aghaeepour n. PLoS One. 2020 Mar 3;15(3):e0230000. doi: 10.1371/journal.pone.0230000. eCollection 2020. PLoS One. 2020. PMID: 32126118 Free PMC article.

173

Multiomic immune clockworks of pregnancy.

Peterson LS, Stelzer IA, Tsai AS, Ghaemi MS, Han X, Ando K, Winn VD, Martinez NR, Contrepois K, Moufarrej MN, Quake S, Relman DA, Snyder MP, Shaw GM, Stevenson DK, Wong RJ, Arck P, Angst MS, Aghaeepour N, Gaudilliere B. Peterson LS, et al. Among authors: aghaeepour n. Semin Immunopathol. 2020 Aug;42(4):397-412. doi: 10.1007/s00281-019-00772-1. Epub 2020 Feb 4. Semin Immunopathol. 2020. PMID: 32020337 Free PMC article. Review.

174

Cyt-Geist: Current and Future Challenges in Cytometry: Reports of the CYTO 2019 Conference Workshops.

Czechowska K, Lannigan J, Aghaeepour N, Back JB, Begum J, Behbehani G, Bispo C, Bitoun D, Fernández AB, Boova ST, Brinkman RR, Ciccolella CO, Cotleur B, Davies D, Dela Cruz GV, Del Rio-Guerra R, Des Lauriers-Cox AM, Douagi I, Dumrese C, Bonilla Escobar DL, Estevam J, Ewald C, Fossum A, Gaudillière B, Green C, Groves C, Hall C, Haque Y, Hedrick MN, Hogg K, Hsieh EWY, Irish J, Lederer J, Leipold M, Lewis-Tuffin LJ, Litwin V, Lopez P, Nasdala I, Nedbal J, Ohlsson-Wilhelm BM, Price KM, Rahman AH, Rayanki R, Rieger AM, Robinson JP, Shapiro H, Sun YS, Tang VA, Tesfa L, Telford WG, Walker R, Welsh JA, Wheeler P, Tárnok A. Czechowska K, et al. Among authors: aghaeepour n. Cytometry A. 2019 Dec;95(12):1236-1274. doi: 10.1002/cyto.a.23941. Cytometry A. 2019. PMID: 31833655 Free article. No abstract available.

175

iRhom2 inhibits bile duct obstruction-induced liver fibrosis.

Sundaram B, Behnke K, Belancic A, Al-Salihi MA, Thabet Y, Polz R, Pellegrino R, Zhuang Y, Shinde PV, Xu HC, Vasilevska J, Longerich T, Herebian D, Mayatepek E, Bock HH, May P, Kordes C, Aghaeepour N, Mak TW, Keitel V, Häussinger D, Scheller J, Pandyra AA, Lang KS, Lang PA. Sundaram B, et al. Among authors: aghaeepour n. Sci Signal. 2019 Oct 29;12(605):eaax1194. doi: 10.1126/scisignal.aax1194. Sci Signal. 2019. PMID: 31662486

176

CytoNorm: A Normalization Algorithm for Cytometry Data.

Van Gassen S, Gaudilliere B, Angst MS, Saeys Y, Aghaeepour N. Van Gassen S, et al. Among authors: aghaeepour n. Cytometry A. 2020 Mar;97(3):268-278. doi: 10.1002/cyto.a.23904. Epub 2019 Oct 21. Cytometry A. 2020. PMID: 31633883 Free PMC article.

177

Guidelines for the use of flow cytometry and cell sorting in immunological studies (second edition).

Cossarizza A, Chang HD, Radbruch A, Acs A, Adam D, Adam-Klages S, Agace WW, Aghaeepour N, Akdis M, Allez M, Almeida LN, Alvisi G, Anderson G, Andrä I, Annunziato F, Anselmo A, Bacher P, Baldari CT, Bari S, Barnaba V, Barros-Martins J, Battistini L, Bauer W, Baumgart S, Baumgarth N, Baumjohann D, Baying B, Bebawy M, Becher B, Beisker W, Benes V, Beyaert R, Blanco A, Boardman DA, Bogdan C, Borger JG, Borsellino G, Boulais PE, Bradford JA, Brenner D, Brinkman RR, Brooks AES, Busch DH, Büscher M, Bushnell TP, Calzetti F, Cameron G, Cammarata I, Cao X, Cardell SL, Casola S, Cassatella MA, Cavani A, Celada A, Chatenoud L, Chattopadhyay PK, Chow S, Christakou E, Čičin-Šain L, Clerici M, Colombo FS, Cook L, Cooke A, Cooper AM, Corbett AJ, Cosma A, Cosmi L, Coulie PG, Cumano A, Cvetkovic L, Dang VD, Dang-Heine C, Davey MS, Davies D, De Biasi S, Del Zotto G, Dela Cruz GV, Delacher M, Della Bella S, Dellabona P, Deniz G, Dessing M, Di Santo JP, Diefenbach A, Dieli F, Dolf A, Dörner T, Dress RJ, Dudziak D, Dustin M, Dutertre CA, Ebner F, Eckle SBG, Edinger M, Eede P, Ehrhardt GRA, Eich M, Engel P, Engelhardt B, Erdei A, Esser C, Everts B, Evrard M, Falk CS, Fehniger TA, Felipo-Benavent… See abstract for full author list ➔ Cossarizza A, et al. Among authors: aghaeepour n. Eur J Immunol. 2019 Oct;49(10):1457-1973. doi: 10.1002/eji.201970107. Eur J Immunol. 2019. PMID: 31633216 Free PMC article.

178

Differential Dynamics of the Maternal Immune System in Healthy Pregnancy and Preeclampsia.

Han X, Ghaemi MS, Ando K, Peterson LS, Ganio EA, Tsai AS, Gaudilliere DK, Stelzer IA, Einhaus J, Bertrand B, Stanley N, Culos A, Tanada A, Hedou J, Tsai ES, Fallahzadeh R, Wong RJ, Judy AE, Winn VD, Druzin ML, Blumenfeld YJ, Hlatky MA, Quaintance CC, Gibbs RS, Carvalho B, Shaw GM, Stevenson DK, Angst MS, Aghaeepour N, Gaudilliere B. Han X, et al. Among authors: aghaeepour n. Front Immunol. 2019 Jun 11;10:1305. doi: 10.3389/fimmu.2019.01305. eCollection 2019. Front Immunol. 2019. PMID: 31263463 Free PMC article.

179

Predicting Acute Pain After Surgery: A Multivariate Analysis.

Baca Q, Marti F, Poblete B, Gaudilliere B, Aghaeepour N, Angst MS. Baca Q, et al. Among authors: aghaeepour n. Ann Surg. 2021 Feb 1;273(2):289-298. doi: 10.1097/SLA.0000000000003400. Ann Surg. 2021. PMID: 31188202 Free PMC article.

180

How Clinical Flow Cytometry Rebooted Sepsis Immunology.

Monneret G, Gossez M, Aghaeepour N, Gaudilliere B, Venet F. Monneret G, et al. Among authors: aghaeepour n. Cytometry A. 2019 Apr;95(4):431-441. doi: 10.1002/cyto.a.23749. Epub 2019 Mar 19. Cytometry A. 2019. PMID: 30887636 Free PMC article. Review.

181

A year-long immune profile of the systemic response in acute stroke survivors.

Tsai AS, Berry K, Beneyto MM, Gaudilliere D, Ganio EA, Culos A, Ghaemi MS, Choisy B, Djebali K, Einhaus JF, Bertrand B, Tanada A, Stanley N, Fallahzadeh R, Baca Q, Quach LN, Osborn E, Drag L, Lansberg MG, Angst MS, Gaudilliere B, Buckwalter MS, Aghaeepour N. Tsai AS, et al. Among authors: aghaeepour n. Brain. 2019 Apr 1;142(4):978-991. doi: 10.1093/brain/awz022. Brain. 2019. PMID: 30860258 Free PMC article.

182

A topological view of human CD34⁺ cell state trajectories from integrated single-cell output and proteomic data.

Knapp DJHF, Hammond CA, Wang F, Aghaeepour N, Miller PH, Beer PA, Pellacani D, VanInsberghe M, Hansen C, Bendall SC, Nolan GP, Eaves CJ. Knapp DJHF, et al. Among authors: aghaeepour n. Blood. 2019 Feb 28;133(9):927-939. doi: 10.1182/blood-2018-10-878025. Epub 2019 Jan 8. Blood. 2019. PMID: 30622121 Free PMC article.

183

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy.

Ghaemi MS, DiGiulio DB, Contrepois K, Callahan B, Ngo TTM, Lee-McMullen B, Lehallier B, Robaczewska A, Mcilwain D, Rosenberg-Hasson Y, Wong RJ, Quaintance C, Culos A, Stanley N, Tanada A, Tsai A, Gaudilliere D, Ganio E, Han X, Ando K, McNeil L, Tingle M, Wise P, Maric I, Sirota M, Wyss-Coray T, Winn VD, Druzin ML, Gibbs R, Darmstadt GL, Lewis DB, Partovi Nia V, Agard B, Tibshirani R, Nolan G, Snyder MP, Relman DA, Quake SR, Shaw GM, Stevenson DK, Angst MS, Gaudilliere B, Aghaeepour N. Ghaemi MS, et al. Among authors: aghaeepour n. Bioinformatics. 2019 Jan 1;35(1):95-103. doi: 10.1093/bioinformatics/bty537. Bioinformatics. 2019. PMID: 30561547 Free PMC article.

184

Understanding health disparities.

Stevenson DK, Wong RJ, Aghaeepour N, Angst MS, Darmstadt GL, DiGiulio DB, Druzin ML, Gaudilliere B, Gibbs RS, B Gould J, Katz M, Li J, Moufarrej MN, Quaintance CC, Quake SR, Relman DA, Shaw GM, Snyder MP, Wang X, Wise PH. Stevenson DK, et al. Among authors: aghaeepour n. J Perinatol. 2019 Mar;39(3):354-358. doi: 10.1038/s41372-018-0298-1. Epub 2018 Dec 18. J Perinatol. 2019. PMID: 30560947

185

GateFinder: projection-based gating strategy optimization for flow and mass cytometry.

Aghaeepour N, Simonds EF, Knapp DJHF, Bruggner RV, Sachs K, Culos A, Gherardini PF, Samusik N, Fragiadakis GK, Bendall SC, Gaudilliere B, Angst MS, Eaves CJ, Weiss WA, Fantl WJ, Nolan GP. Aghaeepour N, et al. Bioinformatics. 2018 Dec 1;34(23):4131-4133. doi: 10.1093/bioinformatics/bty430. Bioinformatics. 2018. PMID: 29850785 Free PMC article.

186

Single-cell analysis identifies a CD33⁺ subset of human cord blood cells with high regenerative potential.

Knapp DJHF, Hammond CA, Hui T, van Loenhout MTJ, Wang F, Aghaeepour N, Miller PH, Moksa M, Rabu GM, Beer PA, Pellacani D, Humphries RK, Hansen C, Hirst M, Eaves CJ. Knapp DJHF, et al. Among authors: aghaeepour n. Nat Cell Biol. 2018 Jun;20(6):710-720. doi: 10.1038/s41556-018-0104-5. Epub 2018 May 25. Nat Cell Biol. 2018. PMID: 29802403

187

Residential agricultural pesticide exposures and risks of preeclampsia.

Shaw GM, Yang W, Roberts EM, Aghaeepour N, Mayo JA, Weber KA, Maric I, Carmichael SL, Winn VD, Stevenson DK, English PB. Shaw GM, et al. Among authors: aghaeepour n. Environ Res. 2018 Jul;164:546-555. doi: 10.1016/j.envres.2018.03.020. Epub 2018 Mar 31. Environ Res. 2018. PMID: 29614386 Free PMC article.

188

Single-cell developmental classification of B cell precursor acute lymphoblastic leukemia at diagnosis reveals predictors of relapse.

Good Z, Sarno J, Jager A, Samusik N, Aghaeepour N, Simonds EF, White L, Lacayo NJ, Fantl WJ, Fazio G, Gaipa G, Biondi A, Tibshirani R, Bendall SC, Nolan GP, Davis KL. Good Z, et al. Among authors: aghaeepour n. Nat Med. 2018 May;24(4):474-483. doi: 10.1038/nm.4505. Epub 2018 Mar 5. Nat Med. 2018. PMID: 29505032 Free PMC article.

189

Commonly Occurring Cell Subsets in High-Grade Serous Ovarian Tumors Identified by Single-Cell Mass Cytometry.

Gonzalez VD, Samusik N, Chen TJ, Savig ES, Aghaeepour N, Quigley DA, Huang YW, Giangarrà V, Borowsky AD, Hubbard NE, Chen SY, Han G, Ashworth A, Kipps TJ, Berek JS, Nolan GP, Fantl WJ. Gonzalez VD, et al. Among authors: aghaeepour n. Cell Rep. 2018 Feb 13;22(7):1875-1888. doi: 10.1016/j.celrep.2018.01.053. Cell Rep. 2018. PMID: 29444438 Free PMC article.

190

A proteomic clock of human pregnancy.

Aghaeepour N, Lehallier B, Baca Q, Ganio EA, Wong RJ, Ghaemi MS, Culos A, El-Sayed YY, Blumenfeld YJ, Druzin ML, Winn VD, Gibbs RS, Tibshirani R, Shaw GM, Stevenson DK, Gaudilliere B, Angst MS. Aghaeepour N, et al. Am J Obstet Gynecol. 2018 Mar;218(3):347.e1-347.e14. doi: 10.1016/j.ajog.2017.12.208. Epub 2017 Dec 24. Am J Obstet Gynecol. 2018. PMID: 29277631

191

An immune clock of human pregnancy.

Aghaeepour N, Ganio EA, Mcilwain D, Tsai AS, Tingle M, Van Gassen S, Gaudilliere DK, Baca Q, McNeil L, Okada R, Ghaemi MS, Furman D, Wong RJ, Winn VD, Druzin ML, El-Sayed YY, Quaintance C, Gibbs R, Darmstadt GL, Shaw GM, Stevenson DK, Tibshirani R, Nolan GP, Lewis DB, Angst MS, Gaudilliere B. Aghaeepour N, et al. Sci Immunol. 2017 Sep 1;2(15):eaan2946. doi: 10.1126/sciimmunol.aan2946. Sci Immunol. 2017. PMID: 28864494 Free PMC article.

192

Deep Immune Profiling of an Arginine-Enriched Nutritional Intervention in Patients Undergoing Surgery.

Aghaeepour N, Kin C, Ganio EA, Jensen KP, Gaudilliere DK, Tingle M, Tsai A, Lancero HL, Choisy B, McNeil LS, Okada R, Shelton AA, Nolan GP, Angst MS, Gaudilliere BL. Aghaeepour N, et al. J Immunol. 2017 Sep 15;199(6):2171-2180. doi: 10.4049/jimmunol.1700421. Epub 2017 Aug 9. J Immunol. 2017. PMID: 28794234 Free PMC article.

193

Subglottic Stenosis Following Cardiac Surgery With Cardiopulmonary Bypass in Infants and Children.

Kruse KE, Purohit PJ, Cadman CR, Su F, Aghaeepour N, Hammer GB. Kruse KE, et al. Among authors: aghaeepour n. Pediatr Crit Care Med. 2017 May;18(5):429-433. doi: 10.1097/PCC.0000000000001125. Pediatr Crit Care Med. 2017. PMID: 28277376

194

Multicenter Systems Analysis of Human Blood Reveals Immature Neutrophils in Males and During Pregnancy.

Blazkova J, Gupta S, Liu Y, Gaudilliere B, Ganio EA, Bolen CR, Saar-Dover R, Fragiadakis GK, Angst MS, Hasni S, Aghaeepour N, Stevenson D, Baldwin N, Anguiano E, Chaussabel D, Altman MC, Kaplan MJ, Davis MM, Furman D. Blazkova J, et al. Among authors: aghaeepour n. J Immunol. 2017 Mar 15;198(6):2479-2488. doi: 10.4049/jimmunol.1601855. Epub 2017 Feb 8. J Immunol. 2017. PMID: 28179497 Free PMC article.

195

SESSION INTRODUCTION.

Samusik N, Aghaeepour N, Bendall S. Samusik N, et al. Among authors: aghaeepour n. Pac Symp Biocomput. 2017;22:557-563. doi: 10.1142/9789813207813_0051. Pac Symp Biocomput. 2017. PMID: 27897006 Free article.

196

Distinct signaling programs control human hematopoietic stem cell survival and proliferation.

Knapp DJ, Hammond CA, Aghaeepour N, Miller PH, Pellacani D, Beer PA, Sachs K, Qiao W, Wang W, Humphries RK, Sauvageau G, Zandstra PW, Bendall SC, Nolan GP, Hansen C, Eaves CJ. Knapp DJ, et al. Among authors: aghaeepour n. Blood. 2017 Jan 19;129(3):307-318. doi: 10.1182/blood-2016-09-740654. Epub 2016 Nov 8. Blood. 2017. PMID: 27827829 Free PMC article.

197

Mapping the Fetomaternal Peripheral Immune System at Term Pregnancy.

Fragiadakis GK, Baca QJ, Gherardini PF, Ganio EA, Gaudilliere DK, Tingle M, Lancero HL, McNeil LS, Spitzer MH, Wong RJ, Shaw GM, Darmstadt GL, Sylvester KG, Winn VD, Carvalho B, Lewis DB, Stevenson DK, Nolan GP, Aghaeepour N, Angst MS, Gaudilliere BL. Fragiadakis GK, et al. Among authors: aghaeepour n. J Immunol. 2016 Dec 1;197(11):4482-4492. doi: 10.4049/jimmunol.1601195. Epub 2016 Oct 28. J Immunol. 2016. PMID: 27793998 Free PMC article.

198

In Reply.

Angst MS, Fragiadakis GK, Gaudillière B, Aghaeepour N, Nolan GP. Angst MS, et al. Among authors: aghaeepour n. Anesthesiology. 2016 Jun;124(6):1414-5. doi: 10.1097/ALN.0000000000001091. Anesthesiology. 2016. PMID: 27187126 Free PMC article. No abstract available.

199

Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping Consortium.

Finak G, Langweiler M, Jaimes M, Malek M, Taghiyar J, Korin Y, Raddassi K, Devine L, Obermoser G, Pekalski ML, Pontikos N, Diaz A, Heck S, Villanova F, Terrazzini N, Kern F, Qian Y, Stanton R, Wang K, Brandes A, Ramey J, Aghaeepour N, Mosmann T, Scheuermann RH, Reed E, Palucka K, Pascual V, Blomberg BB, Nestle F, Nussenblatt RB, Brinkman RR, Gottardo R, Maecker H, McCoy JP. Finak G, et al. Among authors: aghaeepour n. Sci Rep. 2016 Feb 10;6:20686. doi: 10.1038/srep20686. Sci Rep. 2016. PMID: 26861911 Free PMC article.

200

Automated analysis of flow cytometry data comes of age.

Brinkman RR, Aghaeepour N, Finak G, Gottardo R, Mosmann T, Scheuermann RH. Brinkman RR, et al. Among authors: aghaeepour n. Cytometry A. 2016 Jan;89(1):13-5. doi: 10.1002/cyto.a.22810. Cytometry A. 2016. PMID: 26812230 Free article. No abstract available.

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