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Kinetic Fingerprinting Links Bacteria-Phage Interactions with Emergent Dynamics: Rapid Depletion of Klebsiella pneumoniae Indicates Phage Synergy.
Loessner H, Schlattmeier I, Anders-Maurer M, Bekeredjian-Ding I, Rohde C, Wittmann J, Pokalyuk C, Krut O, Kamp C. Loessner H, et al. Among authors: pokalyuk c. Antibiotics (Basel). 2020 Jul 14;9(7):408. doi: 10.3390/antibiotics9070408. Antibiotics (Basel). 2020. PMID: 32674401 Free PMC article.
Limits and patterns of cytomegalovirus genomic diversity in humans.
Renzette N, Pokalyuk C, Gibson L, Bhattacharjee B, Schleiss MR, Hamprecht K, Yamamoto AY, Mussi-Pinhata MM, Britt WJ, Jensen JD, Kowalik TF. Renzette N, et al. Among authors: pokalyuk c. Proc Natl Acad Sci U S A. 2015 Jul 28;112(30):E4120-8. doi: 10.1073/pnas.1501880112. Epub 2015 Jul 6. Proc Natl Acad Sci U S A. 2015. PMID: 26150505 Free PMC article.
Characterizing human cytomegalovirus reinfection in congenitally infected infants: an evolutionary perspective.
Pokalyuk C, Renzette N, Irwin KK, Pfeifer SP, Gibson L, Britt WJ, Yamamoto AY, Mussi-Pinhata MM, Kowalik TF, Jensen JD. Pokalyuk C, et al. Mol Ecol. 2017 Apr;26(7):1980-1990. doi: 10.1111/mec.13953. Epub 2017 Feb 8. Mol Ecol. 2017. PMID: 27988973
The ancestral selection graph under strong directional selection.
Pokalyuk C, Pfaffelhuber P. Pokalyuk C, et al. Theor Popul Biol. 2013 Aug;87:25-33. doi: 10.1016/j.tpb.2012.09.005. Epub 2012 Oct 12. Theor Popul Biol. 2013. PMID: 23064041
Competing islands limit the rate of adaptation in structured populations.
Pokalyuk C, Mathew LA, Metzler D, Pfaffelhuber P. Pokalyuk C, et al. Theor Popul Biol. 2013 Dec;90:1-11. doi: 10.1016/j.tpb.2013.08.001. Epub 2013 Sep 16. Theor Popul Biol. 2013. PMID: 24051161
The effect of recurrent mutation on the linkage disequilibrium under a selective sweep.
Pokalyuk C. Pokalyuk C. J Math Biol. 2012 Jan;64(1-2):291-317. doi: 10.1007/s00285-011-0411-y. Epub 2011 Feb 27. J Math Biol. 2012. PMID: 21359840