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Table representation of search results timeline featuring number of search results per year.

Year Number of Results
2003 1
2004 3
2005 2
2006 2
2007 3
2010 1
2011 3
2012 3
2013 4
2014 1
2015 4
2016 5
2017 11
2018 6
2019 3
2020 4
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50 results
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Page 1
Quantitative reactivity profiling predicts functional cysteines in proteomes.
Weerapana E, Wang C, Simon GM, Richter F, Khare S, Dillon MB, Bachovchin DA, Mowen K, Baker D, Cravatt BF. Weerapana E, et al. Among authors: khare s. Nature. 2010 Dec 9;468(7325):790-5. doi: 10.1038/nature09472. Epub 2010 Nov 17. Nature. 2010. PMID: 21085121 Free PMC article.
Macromolecular modeling and design in Rosetta: recent methods and frameworks.
Leman JK, Weitzner BD, Lewis SM, Adolf-Bryfogle J, Alam N, Alford RF, Aprahamian M, Baker D, Barlow KA, Barth P, Basanta B, Bender BJ, Blacklock K, Bonet J, Boyken SE, Bradley P, Bystroff C, Conway P, Cooper S, Correia BE, Coventry B, Das R, De Jong RM, DiMaio F, Dsilva L, Dunbrack R, Ford AS, Frenz B, Fu DY, Geniesse C, Goldschmidt L, Gowthaman R, Gray JJ, Gront D, Guffy S, Horowitz S, Huang PS, Huber T, Jacobs TM, Jeliazkov JR, Johnson DK, Kappel K, Karanicolas J, Khakzad H, Khar KR, Khare SD, Khatib F, Khramushin A, King IC, Kleffner R, Koepnick B, Kortemme T, Kuenze G, Kuhlman B, Kuroda D, Labonte JW, Lai JK, Lapidoth G, Leaver-Fay A, Lindert S, Linsky T, London N, Lubin JH, Lyskov S, Maguire J, Malmström L, Marcos E, Marcu O, Marze NA, Meiler J, Moretti R, Mulligan VK, Nerli S, Norn C, Ó'Conchúir S, Ollikainen N, Ovchinnikov S, Pacella MS, Pan X, Park H, Pavlovicz RE, Pethe M, Pierce BG, Pilla KB, Raveh B, Renfrew PD, Burman SSR, Rubenstein A, Sauer MF, Scheck A, Schief W, Schueler-Furman O, Sedan Y, Sevy AM, Sgourakis NG, Shi L, Siegel JB, Silva DA, Smith S, Song Y, Stein A, Szegedy M, Teets FD, Thyme SB, Wang RY, Watkins A, Zimmerman L, Bonneau R. Leman JK, et al. Among authors: khare sd. Nat Methods. 2020 Jul;17(7):665-680. doi: 10.1038/s41592-020-0848-2. Epub 2020 Jun 1. Nat Methods. 2020. PMID: 32483333 Review.
Computational assessment of thioether isosteres.
Barrows RD, Blacklock KM, Rablen PR, Khare SD, Knapp S. Barrows RD, et al. Among authors: khare sd. J Mol Graph Model. 2018 Mar;80:282-292. doi: 10.1016/j.jmgm.2018.01.018. Epub 2018 Feb 1. J Mol Graph Model. 2018. PMID: 29414047
Multi-Pronged Interactions Underlie Inhibition of α-Synuclein Aggregation by β-Synuclein.
Williams JK, Yang X, Atieh TB, Olson MP, Khare SD, Baum J. Williams JK, et al. Among authors: khare sd. J Mol Biol. 2018 Aug 3;430(16):2360-2371. doi: 10.1016/j.jmb.2018.05.024. Epub 2018 May 18. J Mol Biol. 2018. PMID: 29782835 Free PMC article.
Computational Design of Ligand Binding Proteins.
Tinberg CE, Khare SD. Tinberg CE, et al. Among authors: khare sd. Methods Mol Biol. 2017;1529:363-373. doi: 10.1007/978-1-4939-6637-0_19. Methods Mol Biol. 2017. PMID: 27914062
Systematic Comparison of Amber and Rosetta Energy Functions for Protein Structure Evaluation.
Rubenstein AB, Blacklock K, Nguyen H, Case DA, Khare SD. Rubenstein AB, et al. Among authors: khare sd. J Chem Theory Comput. 2018 Nov 13;14(11):6015-6025. doi: 10.1021/acs.jctc.8b00303. Epub 2018 Oct 12. J Chem Theory Comput. 2018. PMID: 30240210
Computational Design of a Photocontrolled Cytosine Deaminase.
Blacklock KM, Yachnin BJ, Woolley GA, Khare SD. Blacklock KM, et al. Among authors: khare sd. J Am Chem Soc. 2018 Jan 10;140(1):14-17. doi: 10.1021/jacs.7b08709. Epub 2017 Dec 28. J Am Chem Soc. 2018. PMID: 29251923 Free PMC article.
Structural principles for computational and de novo design of 4Fe-4S metalloproteins.
Nanda V, Senn S, Pike DH, Rodriguez-Granillo A, Hansen WA, Khare SD, Noy D. Nanda V, et al. Among authors: khare sd. Biochim Biophys Acta. 2016 May;1857(5):531-538. doi: 10.1016/j.bbabio.2015.10.001. Epub 2015 Oct 9. Biochim Biophys Acta. 2016. PMID: 26449207 Free PMC article. Review.
Enzyme stabilization via computationally guided protein stapling.
Moore EJ, Zorine D, Hansen WA, Khare SD, Fasan R. Moore EJ, et al. Among authors: khare sd. Proc Natl Acad Sci U S A. 2017 Nov 21;114(47):12472-12477. doi: 10.1073/pnas.1708907114. Epub 2017 Nov 6. Proc Natl Acad Sci U S A. 2017. PMID: 29109284 Free PMC article.
A computational method for the design of nested proteins by loop-directed domain insertion.
Blacklock KM, Yang L, Mulligan VK, Khare SD. Blacklock KM, et al. Among authors: khare sd. Proteins. 2018 Mar;86(3):354-369. doi: 10.1002/prot.25445. Epub 2018 Jan 24. Proteins. 2018. PMID: 29250820
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