Escher-FBA: a web application for interactive flux balance analysis.
BMC Syst Biol. 2018.
PMID: 30257674
Free PMC article.
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Escher-FBA: a web application for interactive flux balance analysis.
BMC Syst Biol. 2018 Sep 26;12(1):84. doi: 10.1186/s12918-018-0607-5.
BMC Syst Biol. 2018.
PMID: 30257674
Free PMC article.
BACKGROUND: Flux balance analysis (FBA) is a widely-used method for analyzing metabolic networks. ...RESULTS: To meet this need, we present Escher-FBA, a web application for interactive FBA simulations within a pathway visualization. Esch …
BACKGROUND: Flux balance analysis (FBA) is a widely-used method for analyzing metabolic networks. ...RESULTS: To meet t …
IMFLer: A Web Application for Interactive Metabolic Flux Analysis and Visualization.
J Comput Biol. 2021 Oct;28(10):1021-1032. doi: 10.1089/cmb.2021.0056. Epub 2021 Aug 23.
J Comput Biol. 2021.
PMID: 34424732
Several automatic, semiautomatic, and manual visualization tools have already been developed. Some even have integrated flux balance analysis (FBA), but in most cases, it depends on separately installed third party software that is proprietary and does not al …
Several automatic, semiautomatic, and manual visualization tools have already been developed. Some even have integrated flux balan …
MetaNET--a web-accessible interactive platform for biological metabolic network analysis.
BMC Syst Biol. 2014;8:130. doi: 10.1186/s12918-014-0130-2. Epub 2014 Dec 5.
BMC Syst Biol. 2014.
PMID: 25779921
Free PMC article.
We have developed MetaNET, an open source user-friendly platform-independent and web-accessible resource consisting of several pre-defined workflows for metabolic network analysis. ...These include (i) optimization of an objective function for wild type strain, gene …
We have developed MetaNET, an open source user-friendly platform-independent and web-accessible resource consisting of several pre-de …
Fluxer: a web application to compute, analyze and visualize genome-scale metabolic flux networks.
Nucleic Acids Res. 2020 Jul 2;48(W1):W427-W435. doi: 10.1093/nar/gkaa409.
Nucleic Acids Res. 2020.
PMID: 32442279
Free PMC article.
Here we present Fluxer (https://fluxer.umbc.edu), a free and open-access novel web application for the computation and visualization of genome-scale metabolic flux networks. Any genome-scale model based on the Systems Biology Markup Language can be uploaded t …
Here we present Fluxer (https://fluxer.umbc.edu), a free and open-access novel web application for the computation and visuali …
Current Progress and Future Trends in Carbon Sources and Sinks in Farmland Ecosystems: A Bibliometric Analysis (2002-2023).
Biology (Basel). 2025 Apr 2;14(4):365. doi: 10.3390/biology14040365.
Biology (Basel). 2025.
PMID: 40282230
Free PMC article.
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Therefore, systematically studying the roles of carbon sources and sinks in farmland ecosystems is essential to deepening our understanding of the carbon cycle and meeting the goals of "peak carbon emissions" and "carbon neutrality" in agriculture. Using the Web of Science …
Therefore, systematically studying the roles of carbon sources and sinks in farmland ecosystems is essential to deepening our understanding …
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