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2002 1
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110 results

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Page 1
Influenza vaccine effectiveness against medically attended outpatient illness, United States, 2023-24 season.
Chung JR, Price AM, Zimmerman RK, Moehling Geffel K, House SL, Curley T, Wernli KJ, Phillips CH, Martin ET, Vaughn IA, Murugan V, Scotch M, Saade EA, Faryar KA, Gaglani M, Ramm JD, Williams OL, Walter EB, Kirby M, Keong LM, Kondor R, Ellington SR, Flannery B; US Flu VE Network Investigators. Chung JR, et al. Among authors: scotch m. Clin Infect Dis. 2025 Jan 6:ciae658. doi: 10.1093/cid/ciae658. Online ahead of print. Clin Infect Dis. 2025. PMID: 39761230
Influenza vaccine effectiveness against medically attended outpatient illness, United States, 2023-24 season.
Chung JR, Price AM, Zimmerman RK, Geffel KM, House SL, Curley T, Wernli KJ, Phillips CH, Martin ET, Vaughn IA, Murugan V, Scotch M, Saade EA, Faryar KA, Gaglani M, Ramm JD, Williams OL, Walter EB, Kirby M, Keong LM, Kondor R, Ellington SR, Flannery B; US Flu VE Network Investigators. Chung JR, et al. Among authors: scotch m. medRxiv [Preprint]. 2024 Oct 30:2024.10.29.24316377. doi: 10.1101/2024.10.29.24316377. medRxiv. 2024. Update in: Clin Infect Dis. 2025 Jan 06:ciae658. doi: 10.1093/cid/ciae658. PMID: 39574872 Free PMC article. Updated. Preprint.
Adenovirus 41 diversity in Arizona (USA) using wastewater-based epidemiology, long-range PCR, and pathogen sequencing between October 2019 and March 2020.
Faleye TOC, Skidmore P, Elyaderani A, Adhikari S, Kaiser N, Smith A, Yanez A, Perleberg T, Driver EM, Halden RU, Varsani A, Scotch M. Faleye TOC, et al. Among authors: scotch m. Epidemiol Infect. 2024 Nov 18;152:e142. doi: 10.1017/S095026882400133X. Epidemiol Infect. 2024. PMID: 39552136 Free PMC article.
Exploring Canine Picornavirus Diversity in the USA Using Wastewater Surveillance: From High-Throughput Genomic Sequencing to Immuno-Informatics and Capsid Structure Modeling.
Faleye TOC, Skidmore P, Elyaderani A, Adhikari S, Kaiser N, Smith A, Yanez A, Perleberg T, Driver EM, Halden RU, Varsani A, Scotch M. Faleye TOC, et al. Among authors: scotch m. Viruses. 2024 Jul 24;16(8):1188. doi: 10.3390/v16081188. Viruses. 2024. PMID: 39205161 Free PMC article.
Genomic epidemiology reveals the dominance of Hennepin County in the transmission of SARS-CoV-2 in Minnesota from 2020 to 2022.
Scotch M, Lauer K, Wieben ED, Cherukuri Y, Cunningham JM, Klee EW, Harrington JJ, Lau JS, McDonough SJ, Mutawe M, O'Horo JC, Rentmeester CE, Schlicher NR, White VT, Schneider SK, Vedell PT, Wang X, Yao JD, Pritt BS, Norgan AP. Scotch M, et al. mSphere. 2023 Dec 20;8(6):e0023223. doi: 10.1128/msphere.00232-23. Epub 2023 Oct 26. mSphere. 2023. PMID: 37882516 Free PMC article.
Text mining biomedical literature to identify extremely unbalanced data for digital epidemiology and systematic reviews: dataset and methods for a SARS-CoV-2 genomic epidemiology study.
Weissenbacher D, O'Connor K, Klein A, Golder S, Flores I, Elyaderani A, Scotch M, Gonzalez-Hernandez G. Weissenbacher D, et al. Among authors: scotch m. medRxiv [Preprint]. 2023 Aug 4:2023.07.29.23293370. doi: 10.1101/2023.07.29.23293370. medRxiv. 2023. PMID: 37577535 Free PMC article. Preprint.
Rhizobium Phage-Like Microvirus Genome Sequence Identified in Wastewater in Arizona, USA, in November 2020 Encodes an Endolysin and a Putative Multiheme Cytochrome c-like Protein.
Chapman AR, Wright JM, Kaiser NA, Jones PM, Driver EM, Halden RU, Varsani A, Scotch M, Faleye TOC. Chapman AR, et al. Among authors: scotch m. Microbiol Resour Announc. 2023 May 17;12(5):e0006923. doi: 10.1128/mra.00069-23. Epub 2023 Apr 26. Microbiol Resour Announc. 2023. PMID: 37098909 Free PMC article.
Wastewater surveillance uncovers regional diversity and dynamics of SARS-CoV-2 variants across nine states in the USA.
Fontenele RS, Yang Y, Driver EM, Magge A, Kraberger S, Custer JM, Dufault-Thompson K, Cox E, Newell ME, Varsani A, Halden RU, Scotch M, Jiang X. Fontenele RS, et al. Among authors: scotch m. Sci Total Environ. 2023 Jun 15;877:162862. doi: 10.1016/j.scitotenv.2023.162862. Epub 2023 Mar 16. Sci Total Environ. 2023. PMID: 36933724 Free PMC article.
Leveraging an established neighbourhood-level, open access wastewater monitoring network to address public health priorities: a population-based study.
Bowes DA, Driver EM, Kraberger S, Fontenele RS, Holland LA, Wright J, Johnston B, Savic S, Engstrom Newell M, Adhikari S, Kumar R, Goetz H, Binsfeld A, Nessi K, Watkins P, Mahant A, Zevitz J, Deitrick S, Brown P, Dalton R, Garcia C, Inchausti R, Holmes W, Tian XJ, Varsani A, Lim ES, Scotch M, Halden RU. Bowes DA, et al. Among authors: scotch m. Lancet Microbe. 2023 Jan;4(1):e29-e37. doi: 10.1016/S2666-5247(22)00289-0. Epub 2022 Dec 6. Lancet Microbe. 2023. PMID: 36493788 Free PMC article.
Complete Coding Sequences of Rhinovirus Types A46, A39, C56, and C48.
Collins CL, Faleye TOC, Kraberger S, Fontenele RS, Adams D, Adhikari S, Sandrolini H, Finnerty S, Halden RU, Scotch M, Varsani A. Collins CL, et al. Among authors: scotch m. Microbiol Resour Announc. 2022 Nov 17;11(11):e0068022. doi: 10.1128/mra.00680-22. Epub 2022 Oct 26. Microbiol Resour Announc. 2022. PMID: 36287087 Free PMC article.
Surveillance of rhinovirus diversity among a university community identifies multiple types from all three species including an unassigned rhinovirus A genotype.
Faleye TOC, Elyaderani A, Skidmore P, Adhikari S, Smith A, Kaiser N, Sandrolini H, Finnerty S, Halden RU, Varsani A, Scotch M. Faleye TOC, et al. Among authors: scotch m. Influenza Other Respir Viruses. 2023 Jan;17(1):e13057. doi: 10.1111/irv.13057. Epub 2022 Sep 28. Influenza Other Respir Viruses. 2023. PMID: 36168937 Free PMC article.
Genome Sequence of a Microvirus Recovered from Wastewater in Arizona, USA, in October 2020, Encodes a Previously Undescribed DNA-Binding Protein.
Smith A, Kaiser N, Yanez A, Perleberg T, Elyaderani A, Skidmore P, Adhikari S, Driver EM, Halden RU, Varsani A, Scotch M, Faleye TOC. Smith A, et al. Among authors: scotch m. Microbiol Resour Announc. 2022 Oct 20;11(10):e0033722. doi: 10.1128/mra.00337-22. Epub 2022 Aug 31. Microbiol Resour Announc. 2022. PMID: 36043869 Free PMC article.
Genomic epidemiology reveals the dominance of Hennepin County in transmission of SARS-CoV-2 in Minnesota from 2020-2022.
Scotch M, Lauer K, Wieben ED, Cherukuri Y, Cunningham JM, Klee EW, Harrington JJ, Lau JS, McDonough SJ, Mutawe M, O'Horo JC, Rentmeester CE, Schlicher NR, White VT, Schneider SK, Vedell PT, Wang X, Yao JD, Pritt BS, Norgan AP. Scotch M, et al. medRxiv [Preprint]. 2023 Apr 26:2022.07.24.22277978. doi: 10.1101/2022.07.24.22277978. medRxiv. 2023. Update in: mSphere. 2023 Dec 20;8(6):e0023223. doi: 10.1128/msphere.00232-23. PMID: 35923324 Free PMC article. Updated. Preprint.
Canine picornaviruses detected in wastewater in Arizona, USA 2019 and 2021.
Faleye TOC, Skidmore PT, Elyaderani A, Smith A, Kaiser N, Adhikari S, Yanez A, Perleberg T, Driver EM, Halden RU, Varsani A, Scotch M. Faleye TOC, et al. Among authors: scotch m. Infect Genet Evol. 2022 Sep;103:105315. doi: 10.1016/j.meegid.2022.105315. Epub 2022 Jun 14. Infect Genet Evol. 2022. PMID: 35714764 Free PMC article.
High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants.
Fontenele RS, Kraberger S, Hadfield J, Driver EM, Bowes D, Holland LA, Faleye TOC, Adhikari S, Kumar R, Inchausti R, Holmes WK, Deitrick S, Brown P, Duty D, Smith T, Bhatnagar A, Yeager RA 2nd, Holm RH, von Reitzenstein NH, Wheeler E, Dixon K, Constantine T, Wilson MA, Lim ES, Jiang X, Halden RU, Scotch M, Varsani A. Fontenele RS, et al. Among authors: scotch m. Water Res. 2021 Oct 15;205:117710. doi: 10.1016/j.watres.2021.117710. Epub 2021 Sep 25. Water Res. 2021. PMID: 34607084 Free PMC article.
Use of hemagglutinin and neuraminidase amplicon-based high-throughput sequencing with variant analysis to detect co-infection and resolve identical consensus sequences of seasonal influenza in a university setting.
Faleye TOC, Adams D, Adhikari S, Sandrolini H, Halden RU, Varsani A, Scotch M. Faleye TOC, et al. Among authors: scotch m. BMC Infect Dis. 2021 Aug 13;21(1):810. doi: 10.1186/s12879-021-06526-5. BMC Infect Dis. 2021. PMID: 34388979 Free PMC article.
High-throughput sequencing of SARS-CoV-2 in wastewater provides insights into circulating variants.
Fontenele RS, Kraberger S, Hadfield J, Driver EM, Bowes D, Holland LA, Faleye TOC, Adhikari S, Kumar R, Inchausti R, Holmes WK, Deitrick S, Brown P, Duty D, Smith T, Bhatnagar A, Yeager RA 2nd, Holm RH, von Reitzenstein NH, Wheeler E, Dixon K, Constantine T, Wilson MA, Lim ES, Jiang X, Halden RU, Scotch M, Varsani A. Fontenele RS, et al. Among authors: scotch m. medRxiv [Preprint]. 2021 Jan 25:2021.01.22.21250320. doi: 10.1101/2021.01.22.21250320. medRxiv. 2021. Update in: Water Res. 2021 Oct 15;205:117710. doi: 10.1016/j.watres.2021.117710. PMID: 33501452 Free PMC article. Updated. Preprint.
An 81 base-pair deletion in SARS-CoV-2 ORF7a identified from sentinel surveillance in Arizona (Jan-Mar 2020).
Holland LA, Kaelin EA, Maqsood R, Estifanos B, Wu LI, Varsani A, Halden RU, Hogue BG, Scotch M, Lim ES. Holland LA, et al. Among authors: scotch m. medRxiv [Preprint]. 2020 Apr 22:2020.04.17.20069641. doi: 10.1101/2020.04.17.20069641. medRxiv. 2020. Update in: J Virol. 2020 Jul 1;94(14):e00711-20. doi: 10.1128/JVI.00711-20. PMID: 32511591 Free PMC article. Updated. Preprint. No abstract available.
Next generation sequencing of human enterovirus strains from an outbreak of enterovirus A71 shows applicability to outbreak investigations.
Stelzer-Braid S, Wynn M, Chatoor R, Scotch M, Ramachandran V, Teoh HL, Farrar MA, Sampaio H, Andrews PI, Craig ME, MacIntyre CR, Varadhan H, Kesson A, Britton PN, Newcombe J, Rawlinson WD. Stelzer-Braid S, et al. Among authors: scotch m. J Clin Virol. 2020 Jan;122:104216. doi: 10.1016/j.jcv.2019.104216. Epub 2019 Nov 17. J Clin Virol. 2020. PMID: 31790967 Free PMC article.
110 results