serohijos adrian - Search Results

Year	Number of Results
2006	1
2007	1
2008	6
2009	3
2011	3
2012	3
2013	4
2014	4
2015	3
2016	2
2017	3
2018	3
2019	4
2020	2
2021	0

1

Chromosomal barcoding of E. coli populations reveals lineage diversity dynamics at high resolution.

Jasinska W, Manhart M, Lerner J, Gauthier L, Serohijos AWR, Bershtein S. Jasinska W, et al. Among authors: serohijos awr. Nat Ecol Evol. 2020 Mar;4(3):437-452. doi: 10.1038/s41559-020-1103-z. Epub 2020 Feb 24. Nat Ecol Evol. 2020. PMID: 32094541

2

Genetics' Piece of the PI: Inferring the Origin of Complex Traits and Diseases from Proteome-Wide Protein-Protein Interaction Dynamics.

Gauthier L, Stynen B, Serohijos AWR, Michnick SW. Gauthier L, et al. Among authors: serohijos awr. Bioessays. 2020 Feb;42(2):e1900169. doi: 10.1002/bies.201900169. Epub 2019 Dec 18. Bioessays. 2020. PMID: 31854021 Review.

3

The Combination of IFN β and TNF Induces an Antiviral and Immunoregulatory Program via Non-Canonical Pathways Involving STAT2 and IRF9.

Mariani MK, Dasmeh P, Fortin A, Caron E, Kalamujic M, Harrison AN, Hotea DI, Kasumba DM, Cervantes-Ortiz SL, Mukawera E, Serohijos AWR, Grandvaux N. Mariani MK, et al. Among authors: serohijos awr. Cells. 2019 Aug 17;8(8):919. doi: 10.3390/cells8080919. Cells. 2019. PMID: 31426476 Free PMC article.

4

A functional substitution in the L-aromatic amino acid decarboxylase enzyme worsens somatic symptoms via a serotonergic pathway.

Khoury S, Piltonen MH, Ton AT, Cole T, Samoshkin A, Smith SB, Belfer I, Slade GD, Fillingim RB, Greenspan JD, Ohrbach R, Maixner W, Neely GG, Serohijos AWR, Diatchenko L. Khoury S, et al. Among authors: serohijos awr. Ann Neurol. 2019 Aug;86(2):168-180. doi: 10.1002/ana.25521. Epub 2019 Jun 8. Ann Neurol. 2019. PMID: 31177555

5

SodaPop: a forward simulation suite for the evolutionary dynamics of asexual populations on protein fitness landscapes.

Gauthier L, Di Franco R, Serohijos AWR. Gauthier L, et al. Among authors: serohijos awr. Bioinformatics. 2019 Oct 15;35(20):4053-4062. doi: 10.1093/bioinformatics/btz175. Bioinformatics. 2019. PMID: 30873519

6

Estimating the contribution of folding stability to nonspecific epistasis in protein evolution.

Dasmeh P, Serohijos AWR. Dasmeh P, et al. Among authors: serohijos awr. Proteins. 2018 Dec;86(12):1242-1250. doi: 10.1002/prot.25588. Epub 2018 Nov 9. Proteins. 2018. PMID: 30039542

7

Evolution on the Biophysical Fitness Landscape of an RNA Virus.

Rotem A, Serohijos AWR, Chang CB, Wolfe JT, Fischer AE, Mehoke TS, Zhang H, Tao Y, Lloyd Ung W, Choi JM, Rodrigues JV, Kolawole AO, Koehler SA, Wu S, Thielen PM, Cui N, Demirev PA, Giacobbi NS, Julian TR, Schwab K, Lin JS, Smith TJ, Pipas JM, Wobus CE, Feldman AB, Weitz DA, Shakhnovich EI. Rotem A, et al. Among authors: serohijos awr. Mol Biol Evol. 2018 Oct 1;35(10):2390-2400. doi: 10.1093/molbev/msy131. Mol Biol Evol. 2018. PMID: 29955873 Free PMC article.

8

Stability of the Influenza Virus Hemagglutinin Protein Correlates with Evolutionary Dynamics.

Klein EY, Blumenkrantz D, Serohijos A, Shakhnovich E, Choi JM, Rodrigues JV, Smith BD, Lane AP, Feldman A, Pekosz A. Klein EY, et al. Among authors: serohijos a. mSphere. 2018 Jan 3;3(1):e00554-17. doi: 10.1128/mSphereDirect.00554-17. eCollection 2018 Jan-Feb. mSphere. 2018. PMID: 29299534 Free PMC article.

9

Highly expressed genes evolve under strong epistasis from a proteome-wide scan in E. coli.

Dasmeh P, Girard É, Serohijos AWR. Dasmeh P, et al. Among authors: serohijos awr. Sci Rep. 2017 Nov 20;7(1):15844. doi: 10.1038/s41598-017-16030-z. Sci Rep. 2017. PMID: 29158562 Free PMC article.

10

Molecular basis of interactions between SH3 domain-containing proteins and the proline-rich region of the ubiquitin ligase Itch.

Desrochers G, Cappadocia L, Lussier-Price M, Ton AT, Ayoubi R, Serohijos A, Omichinski JG, Angers A. Desrochers G, et al. Among authors: serohijos a. J Biol Chem. 2017 Apr 14;292(15):6325-6338. doi: 10.1074/jbc.M116.754440. Epub 2017 Feb 24. J Biol Chem. 2017. PMID: 28235806 Free PMC article.

11

Bridging the physical scales in evolutionary biology: from protein sequence space to fitness of organisms and populations.

Bershtein S, Serohijos AW, Shakhnovich EI. Bershtein S, et al. Among authors: serohijos aw. Curr Opin Struct Biol. 2017 Feb;42:31-40. doi: 10.1016/j.sbi.2016.10.013. Epub 2016 Oct 31. Curr Opin Struct Biol. 2017. PMID: 27810574 Free PMC article. Review.

12

Evolutionary dynamics of viral escape under antibodies stress: A biophysical model.

Chéron N, Serohijos AW, Choi JM, Shakhnovich EI. Chéron N, et al. Among authors: serohijos aw. Protein Sci. 2016 Jul;25(7):1332-40. doi: 10.1002/pro.2915. Epub 2016 Mar 24. Protein Sci. 2016. PMID: 26939576 Free PMC article.

13

Protein Homeostasis Imposes a Barrier on Functional Integration of Horizontally Transferred Genes in Bacteria.

Bershtein S, Serohijos AW, Bhattacharyya S, Manhart M, Choi JM, Mu W, Zhou J, Shakhnovich EI. Bershtein S, et al. Among authors: serohijos aw. PLoS Genet. 2015 Oct 20;11(10):e1005612. doi: 10.1371/journal.pgen.1005612. eCollection 2015 Oct. PLoS Genet. 2015. PMID: 26484862 Free PMC article.

14

Isolation and Analysis of Rare Norovirus Recombinants from Coinfected Mice Using Drop-Based Microfluidics.

Zhang H, Cockrell SK, Kolawole AO, Rotem A, Serohijos AW, Chang CB, Tao Y, Mehoke TS, Han Y, Lin JS, Giacobbi NS, Feldman AB, Shakhnovich E, Weitz DA, Wobus CE, Pipas JM. Zhang H, et al. Among authors: serohijos aw. J Virol. 2015 Aug;89(15):7722-34. doi: 10.1128/JVI.01137-15. Epub 2015 May 13. J Virol. 2015. PMID: 25972549 Free PMC article.

15

Minimalistic predictor of protein binding energy: contribution of solvation factor to protein binding.

Choi JM, Serohijos AWR, Murphy S, Lucarelli D, Lofranco LL, Feldman A, Shakhnovich EI. Choi JM, et al. Among authors: serohijos awr. Biophys J. 2015 Feb 17;108(4):795-798. doi: 10.1016/j.bpj.2015.01.001. Biophys J. 2015. PMID: 25692584 Free PMC article.

16

The influence of selection for protein stability on dN/dS estimations.

Dasmeh P, Serohijos AW, Kepp KP, Shakhnovich EI. Dasmeh P, et al. Among authors: serohijos aw. Genome Biol Evol. 2014 Oct 28;6(10):2956-67. doi: 10.1093/gbe/evu223. Genome Biol Evol. 2014. PMID: 25355808 Free PMC article.

17

Merging molecular mechanism and evolution: theory and computation at the interface of biophysics and evolutionary population genetics.

Serohijos AW, Shakhnovich EI. Serohijos AW, et al. Curr Opin Struct Biol. 2014 Jun;26:84-91. doi: 10.1016/j.sbi.2014.05.005. Epub 2014 Jun 19. Curr Opin Struct Biol. 2014. PMID: 24952216 Free PMC article. Review.

18

Influenza A H1N1 pandemic strain evolution--divergence and the potential for antigenic drift variants.

Klein EY, Serohijos AW, Choi JM, Shakhnovich EI, Pekosz A. Klein EY, et al. Among authors: serohijos aw. PLoS One. 2014 Apr 3;9(4):e93632. doi: 10.1371/journal.pone.0093632. eCollection 2014. PLoS One. 2014. PMID: 24699432 Free PMC article.

19

Contribution of selection for protein folding stability in shaping the patterns of polymorphisms in coding regions.

Serohijos AW, Shakhnovich EI. Serohijos AW, et al. Mol Biol Evol. 2014 Jan;31(1):165-76. doi: 10.1093/molbev/mst189. Epub 2013 Oct 11. Mol Biol Evol. 2014. PMID: 24124208 Free PMC article.

20

Positively selected sites in cetacean myoglobins contribute to protein stability.

Dasmeh P, Serohijos AW, Kepp KP, Shakhnovich EI. Dasmeh P, et al. Among authors: serohijos aw. PLoS Comput Biol. 2013;9(3):e1002929. doi: 10.1371/journal.pcbi.1002929. Epub 2013 Mar 7. PLoS Comput Biol. 2013. PMID: 23505347 Free PMC article.

21

Highly abundant proteins favor more stable 3D structures in yeast.

Serohijos AW, Lee SY, Shakhnovich EI. Serohijos AW, et al. Biophys J. 2013 Feb 5;104(3):L1-3. doi: 10.1016/j.bpj.2012.11.3838. Biophys J. 2013. PMID: 23442924 Free PMC article.

22

Protein quality control acts on folding intermediates to shape the effects of mutations on organismal fitness.

Bershtein S, Mu W, Serohijos AW, Zhou J, Shakhnovich EI. Bershtein S, et al. Among authors: serohijos aw. Mol Cell. 2013 Jan 10;49(1):133-44. doi: 10.1016/j.molcel.2012.11.004. Epub 2012 Dec 6. Mol Cell. 2013. PMID: 23219534 Free PMC article.

23

Protein biophysics explains why highly abundant proteins evolve slowly.

Serohijos AW, Rimas Z, Shakhnovich EI. Serohijos AW, et al. Cell Rep. 2012 Aug 30;2(2):249-56. doi: 10.1016/j.celrep.2012.06.022. Epub 2012 Aug 2. Cell Rep. 2012. PMID: 22938865 Free PMC article.

24

The Streptomyces-produced antibiotic fosfomycin is a promiscuous substrate for archaeal isopentenyl phosphate kinase.

Mabanglo MF, Serohijos AW, Poulter CD. Mabanglo MF, et al. Among authors: serohijos aw. Biochemistry. 2012 Jan 31;51(4):917-25. doi: 10.1021/bi201662k. Epub 2012 Jan 11. Biochemistry. 2012. PMID: 22148590 Free PMC article.

25

Structural basis for μ-opioid receptor binding and activation.

Serohijos AW, Yin S, Ding F, Gauthier J, Gibson DG, Maixner W, Dokholyan NV, Diatchenko L. Serohijos AW, et al. Structure. 2011 Nov 9;19(11):1683-90. doi: 10.1016/j.str.2011.08.003. Structure. 2011. PMID: 22078567 Free PMC article.

26

A physical model reveals the mechanochemistry responsible for dynein's processive motion.

Tsygankov D, Serohijos AW, Dokholyan NV, Elston TC. Tsygankov D, et al. Among authors: serohijos aw. Biophys J. 2011 Jul 6;101(1):144-50. doi: 10.1016/j.bpj.2011.05.043. Biophys J. 2011. PMID: 21723824 Free PMC article.

27

Molecular modeling tools and approaches for CFTR and cystic fibrosis.

Serohijos AW, Thibodeau PH, Dokholyan NV. Serohijos AW, et al. Methods Mol Biol. 2011;741:347-63. doi: 10.1007/978-1-61779-117-8_23. Methods Mol Biol. 2011. PMID: 21594796

28

Multiscale approaches for studying energy transduction in dynein.

Serohijos AW, Tsygankov D, Liu S, Elston TC, Dokholyan NV. Serohijos AW, et al. Phys Chem Chem Phys. 2009 Jun 28;11(24):4840-50. doi: 10.1039/b902028d. Epub 2009 May 15. Phys Chem Chem Phys. 2009. PMID: 19506759 Free PMC article. Review.

29

A structural model of the pore-forming region of the skeletal muscle ryanodine receptor (RyR1).

Ramachandran S, Serohijos AW, Xu L, Meissner G, Dokholyan NV. Ramachandran S, et al. Among authors: serohijos aw. PLoS Comput Biol. 2009 Apr;5(4):e1000367. doi: 10.1371/journal.pcbi.1000367. Epub 2009 Apr 24. PLoS Comput Biol. 2009. PMID: 19390614 Free PMC article.

30

Kinetic models for the coordinated stepping of cytoplasmic dynein.

Tsygankov D, Serohijos AW, Dokholyan NV, Elston TC. Tsygankov D, et al. Among authors: serohijos aw. J Chem Phys. 2009 Jan 14;130(2):025101. doi: 10.1063/1.3050098. J Chem Phys. 2009. PMID: 19154055 Free PMC article.

31

Identification and rational redesign of peptide ligands to CRIP1, a novel biomarker for cancers.

Hao J, Serohijos AW, Newton G, Tassone G, Wang Z, Sgroi DC, Dokholyan NV, Basilion JP. Hao J, et al. Among authors: serohijos aw. PLoS Comput Biol. 2008 Aug 1;4(8):e1000138. doi: 10.1371/journal.pcbi.1000138. PLoS Comput Biol. 2008. PMID: 18670594 Free PMC article.

32

Multiple membrane-cytoplasmic domain contacts in the cystic fibrosis transmembrane conductance regulator (CFTR) mediate regulation of channel gating.

He L, Aleksandrov AA, Serohijos AW, Hegedus T, Aleksandrov LA, Cui L, Dokholyan NV, Riordan JR. He L, et al. Among authors: serohijos aw. J Biol Chem. 2008 Sep 26;283(39):26383-90. doi: 10.1074/jbc.M803894200. Epub 2008 Jul 25. J Biol Chem. 2008. PMID: 18658148 Free PMC article.

33

Diminished self-chaperoning activity of the DeltaF508 mutant of CFTR results in protein misfolding.

Serohijos AW, Hegedus T, Riordan JR, Dokholyan NV. Serohijos AW, et al. PLoS Comput Biol. 2008 Feb 29;4(2):e1000008. doi: 10.1371/journal.pcbi.1000008. PLoS Comput Biol. 2008. PMID: 18463704 Free PMC article.

34

Computational studies reveal phosphorylation-dependent changes in the unstructured R domain of CFTR.

Hegedus T, Serohijos AW, Dokholyan NV, He L, Riordan JR. Hegedus T, et al. Among authors: serohijos aw. J Mol Biol. 2008 May 16;378(5):1052-63. doi: 10.1016/j.jmb.2008.03.033. Epub 2008 Mar 26. J Mol Biol. 2008. PMID: 18423665 Free PMC article.

35

Phenylalanine-508 mediates a cytoplasmic-membrane domain contact in the CFTR 3D structure crucial to assembly and channel function.

Serohijos AW, Hegedus T, Aleksandrov AA, He L, Cui L, Dokholyan NV, Riordan JR. Serohijos AW, et al. Proc Natl Acad Sci U S A. 2008 Mar 4;105(9):3256-61. doi: 10.1073/pnas.0800254105. Epub 2008 Feb 27. Proc Natl Acad Sci U S A. 2008. PMID: 18305154 Free PMC article.

36

Protein folding: then and now.

Chen Y, Ding F, Nie H, Serohijos AW, Sharma S, Wilcox KC, Yin S, Dokholyan NV. Chen Y, et al. Among authors: serohijos aw. Arch Biochem Biophys. 2008 Jan 1;469(1):4-19. doi: 10.1016/j.abb.2007.05.014. Epub 2007 Jun 8. Arch Biochem Biophys. 2008. PMID: 17585870 Free PMC article.

37

A structural model reveals energy transduction in dynein.

Serohijos AW, Chen Y, Ding F, Elston TC, Dokholyan NV. Serohijos AW, et al. Proc Natl Acad Sci U S A. 2006 Dec 5;103(49):18540-5. doi: 10.1073/pnas.0602867103. Epub 2006 Nov 22. Proc Natl Acad Sci U S A. 2006. PMID: 17121997 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

Search Page

Search Results