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PRODRG: a tool for high-throughput crystallography of protein-ligand complexes.
Schüttelkopf AW, van Aalten DM. Schüttelkopf AW, et al. Among authors: van aalten dm. Acta Crystallogr D Biol Crystallogr. 2004 Aug;60(Pt 8):1355-63. doi: 10.1107/S0907444904011679. Epub 2004 Jul 21. Acta Crystallogr D Biol Crystallogr. 2004. PMID: 15272157
PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules.
van Aalten DM, Bywater R, Findlay JB, Hendlich M, Hooft RW, Vriend G. van Aalten DM, et al. J Comput Aided Mol Des. 1996 Jun;10(3):255-62. doi: 10.1007/BF00355047. J Comput Aided Mol Des. 1996. PMID: 8808741
Prediction of protein conformational freedom from distance constraints.
de Groot BL, van Aalten DM, Scheek RM, Amadei A, Vriend G, Berendsen HJ. de Groot BL, et al. Among authors: van aalten dm. Proteins. 1997 Oct;29(2):240-51. doi: 10.1002/(sici)1097-0134(199710)29:2<240::aid-prot11>3.0.co;2-o. Proteins. 1997. PMID: 9329088
Crystallization and X-ray diffraction studies of the fatty-acid responsive transcription factor FadR from Escherichia coli.
van Aalten DM, Knudsen J, DiRusso CC, Kokko T, Wierenga RK. van Aalten DM, et al. Acta Crystallogr D Biol Crystallogr. 2000 Apr;56(Pt 4):469-71. doi: 10.1107/s0907444900000937. Acta Crystallogr D Biol Crystallogr. 2000. PMID: 10739923
Crystallization and X-ray diffraction analysis of peroxisomal Delta3-Delta2-enoyl-CoA isomerase from Saccharomyces cerevisiae.
Mursula AM, van Aalten DM, Modis Y, Hiltunen JK, Wierenga RK. Mursula AM, et al. Among authors: van aalten dm. Acta Crystallogr D Biol Crystallogr. 2000 Aug;56(Pt 8):1020-3. doi: 10.1107/s0907444900006533. Acta Crystallogr D Biol Crystallogr. 2000. PMID: 10944342
Structural insights into the catalytic mechanism of a family 18 exo-chitinase.
van Aalten DM, Komander D, Synstad B, Gåseidnes S, Peter MG, Eijsink VG. van Aalten DM, et al. Proc Natl Acad Sci U S A. 2001 Jul 31;98(16):8979-84. doi: 10.1073/pnas.151103798. Proc Natl Acad Sci U S A. 2001. PMID: 11481469 Free PMC article.
Binding site differences revealed by crystal structures of Plasmodium falciparum and bovine acyl-CoA binding protein.
van Aalten DM, Milne KG, Zou JY, Kleywegt GJ, Bergfors T, Ferguson MA, Knudsen J, Jones TA. van Aalten DM, et al. J Mol Biol. 2001 May 25;309(1):181-92. doi: 10.1006/jmbi.2001.4749. J Mol Biol. 2001. PMID: 11491287
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