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Extent, causes, and consequences of small RNA expression variation in human adipose tissue.
Parts L, Hedman ÅK, Keildson S, Knights AJ, Abreu-Goodger C, van de Bunt M, Guerra-Assunção JA, Bartonicek N, van Dongen S, Mägi R, Nisbet J, Barrett A, Rantalainen M, Nica AC, Quail MA, Small KS, Glass D, Enright AJ, Winn J; MuTHER Consortium, Deloukas P, Dermitzakis ET, McCarthy MI, Spector TD, Durbin R, Lindgren CM. Parts L, et al. Among authors: van dongen s, van de bunt m. PLoS Genet. 2012;8(5):e1002704. doi: 10.1371/journal.pgen.1002704. Epub 2012 May 10. PLoS Genet. 2012. PMID: 22589741 Free PMC article.
Using MCL to extract clusters from networks.
van Dongen S, Abreu-Goodger C. van Dongen S, et al. Methods Mol Biol. 2012;804:281-95. doi: 10.1007/978-1-61779-361-5_15. Methods Mol Biol. 2012. PMID: 22144159
miRBase: microRNA sequences, targets and gene nomenclature.
Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A, Enright AJ. Griffiths-Jones S, et al. Among authors: van dongen s. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4. doi: 10.1093/nar/gkj112. Nucleic Acids Res. 2006. PMID: 16381832 Free PMC article.
Messenger RNA and microRNA profiling during early mouse EB formation.
Tripathi R, Saini HK, Rad R, Abreu-Goodger C, van Dongen S, Enright AJ. Tripathi R, et al. Among authors: van dongen s. Gene Expr Patterns. 2011 Jun-Jul;11(5-6):334-44. doi: 10.1016/j.gep.2011.03.004. Epub 2011 Apr 1. Gene Expr Patterns. 2011. PMID: 21440681
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