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RSAT::Plants: Motif Discovery in ChIP-Seq Peaks of Plant Genomes.
Castro-Mondragon JA, Rioualen C, Contreras-Moreira B, van Helden J. Castro-Mondragon JA, et al. Among authors: van helden j. Methods Mol Biol. 2016;1482:297-322. doi: 10.1007/978-1-4939-6396-6_19. Methods Mol Biol. 2016. PMID: 27557775
RSAT 2015: Regulatory Sequence Analysis Tools.
Medina-Rivera A, Defrance M, Sand O, Herrmann C, Castro-Mondragon JA, Delerce J, Jaeger S, Blanchet C, Vincens P, Caron C, Staines DM, Contreras-Moreira B, Artufel M, Charbonnier-Khamvongsa L, Hernandez C, Thieffry D, Thomas-Chollier M, van Helden J. Medina-Rivera A, et al. Among authors: van helden j. Nucleic Acids Res. 2015 Jul 1;43(W1):W50-6. doi: 10.1093/nar/gkv362. Epub 2015 Apr 22. Nucleic Acids Res. 2015. PMID: 25904632 Free PMC article.
Pathway discovery in metabolic networks by subgraph extraction.
Faust K, Dupont P, Callut J, van Helden J. Faust K, et al. Among authors: van helden j. Bioinformatics. 2010 May 1;26(9):1211-8. doi: 10.1093/bioinformatics/btq105. Epub 2010 Mar 12. Bioinformatics. 2010. PMID: 20228128 Free PMC article.
Inferring meaningful pathways in weighted metabolic networks.
Croes D, Couche F, Wodak SJ, van Helden J. Croes D, et al. Among authors: van helden j. J Mol Biol. 2006 Feb 10;356(1):222-36. doi: 10.1016/j.jmb.2005.09.079. Epub 2005 Oct 17. J Mol Biol. 2006. PMID: 16337962
135 results