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Visualizing Genomic Data Using Gviz and Bioconductor.
Hahne F, Ivanek R. Hahne F, et al. Methods Mol Biol. 2016;1418:335-51. doi: 10.1007/978-1-4939-3578-9_16. Methods Mol Biol. 2016. PMID: 27008022
The Gviz package offers a flexible framework to visualize genomic data in the context of a variety of different genome annotation features. Being tightly embedded in the Bioconductor genomics landscape, it nicely integrates with th …
The Gviz package offers a flexible framework to visualize genomic data in the context of a variety of different …
Triplex: an R/Bioconductor package for identification and visualization of potential intramolecular triplex patterns in DNA sequences.
Hon J, Martínek T, Rajdl K, Lexa M. Hon J, et al. Bioinformatics. 2013 Aug 1;29(15):1900-1. doi: 10.1093/bioinformatics/btt299. Epub 2013 May 24. Bioinformatics. 2013. PMID: 23709494
The new package provides functions that can be used to search Bioconductor genomes and other DNA sequence data for occurrence of nucleotide patterns capable of forming intramolecular triplexes (H-DNA). Functions producing 2D and 3D diagrams of the identified …
The new package provides functions that can be used to search Bioconductor genomes and other DNA sequence data for occu …