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mRNA cap-1 methyltransferase in the SARS genome.
von Grotthuss M, Wyrwicz LS, Rychlewski L. von Grotthuss M, et al. Cell. 2003 Jun 13;113(6):701-2. doi: 10.1016/s0092-8674(03)00424-0. Cell. 2003. PMID: 12809601 Free PMC article.
In silico prediction of SARS protease inhibitors by virtual high throughput screening.
Plewczynski D, Hoffmann M, von Grotthuss M, Ginalski K, Rychewski L. Plewczynski D, et al. Chem Biol Drug Des. 2007 Apr;69(4):269-79. doi: 10.1111/j.1747-0285.2007.00475.x. Chem Biol Drug Des. 2007. PMID: 17461975 Free PMC article.
VoteDock: consensus docking method for prediction of protein-ligand interactions.
Plewczynski D, Łaźniewski M, von Grotthuss M, Rychlewski L, Ginalski K. Plewczynski D, et al. J Comput Chem. 2011 Mar;32(4):568-81. doi: 10.1002/jcc.21642. Epub 2010 Sep 1. J Comput Chem. 2011. PMID: 20812324 Free PMC article.
Virtual high throughput screening using combined random forest and flexible docking.
Plewczynski D, von Grotthuss M, Rychlewski L, Ginalski K. Plewczynski D, et al. Comb Chem High Throughput Screen. 2009 Jun;12(5):484-9. doi: 10.2174/138620709788489000. Comb Chem High Throughput Screen. 2009. PMID: 19519327
Target specific compound identification using a support vector machine.
Plewczynski D, von Grotthuss M, Spieser SA, Rychlewski L, Wyrwicz LS, Ginalski K, Koch U. Plewczynski D, et al. Comb Chem High Throughput Screen. 2007 Mar;10(3):189-96. doi: 10.2174/138620707780126705. Comb Chem High Throughput Screen. 2007. PMID: 17346118
3D-Hit: fast structural comparison of proteins.
Plewczyński D, Paś J, von Grotthuss M, Rychlewski L. Plewczyński D, et al. Appl Bioinformatics. 2002;1(4):223-5. Appl Bioinformatics. 2002. PMID: 15130838
PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics.
von Grotthuss M, Plewczynski D, Ginalski K, Rychlewski L, Shakhnovich EI. von Grotthuss M, et al. BMC Bioinformatics. 2006 Feb 6;7:53. doi: 10.1186/1471-2105-7-53. BMC Bioinformatics. 2006. PMID: 16460560 Free PMC article.
Comparison of proteins based on segments structural similarity.
Plewczynski D, Pas J, Von Grotthuss M, Rychlewski L. Plewczynski D, et al. Acta Biochim Pol. 2004;51(1):161-72. Acta Biochim Pol. 2004. PMID: 15094837 Review.
Application of 3D-Jury, GRDB, and Verify3D in fold recognition.
von Grotthuss M, Pas J, Wyrwicz L, Ginalski K, Rychlewski L. von Grotthuss M, et al. Proteins. 2003;53 Suppl 6:418-23. doi: 10.1002/prot.10547. Proteins. 2003. PMID: 14579330
Ligand.Info small-molecule Meta-Database.
von Grotthuss M, Koczyk G, Pas J, Wyrwicz LS, Rychlewski L. von Grotthuss M, et al. Comb Chem High Throughput Screen. 2004 Dec;7(8):757-61. doi: 10.2174/1386207043328265. Comb Chem High Throughput Screen. 2004. PMID: 15578937 Review.
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