Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarray

Michael C Schatz; Adam M Phillippy; Pawel Gajer; Todd Z DeSantis; Gary L Andersen; Jacques Ravel

doi:10.1128/AEM.00303-10

Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarray

Appl Environ Microbiol. 2010 Aug;76(16):5636-8. doi: 10.1128/AEM.00303-10. Epub 2010 Jun 25.

Authors

Michael C Schatz¹, Adam M Phillippy, Pawel Gajer, Todd Z DeSantis, Gary L Andersen, Jacques Ravel

Affiliation

¹ Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA.

Abstract

PhyloTrac is an integrated desktop application for analysis of PhyloChip microarray data. PhyloTrac combined with PhyloChip provides turnkey and comprehensive identification and analysis of bacterial and archaeal communities in complex environmental samples. PhyloTrac is free for noncommercial organizations and is available for all major operating systems at http://www.phylotrac.org/.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Archaea / classification*
Archaea / genetics*
Bacteria / classification*
Bacteria / genetics*
Computational Biology / methods
Environmental Microbiology*
Microarray Analysis / methods*
Oligonucleotide Array Sequence Analysis
Software