Characterization and classification of adherent cells in monolayer culture using automated tracking and evolutionary algorithms

Biosystems. 2016 Aug:146:110-21. doi: 10.1016/j.biosystems.2016.05.009. Epub 2016 Jun 3.

Abstract

This paper presents a novel method for tracking and characterizing adherent cells in monolayer culture. A system of cell tracking employing computer vision techniques was applied to time-lapse videos of replicate normal human uro-epithelial cell cultures exposed to different concentrations of adenosine triphosphate (ATP) and a selective purinergic P2X antagonist (PPADS), acquired over a 24h period. Subsequent analysis following feature extraction demonstrated the ability of the technique to successfully separate the modulated classes of cell using evolutionary algorithms. Specifically, a Cartesian Genetic Program (CGP) network was evolved that identified average migration speed, in-contact angular velocity, cohesivity and average cell clump size as the principal features contributing to the separation. Our approach not only provides non-biased and parsimonious insight into modulated class behaviours, but can be extracted as mathematical formulae for the parameterization of computational models.

MeSH terms

  • Adenosine Triphosphate / pharmacology
  • Algorithms*
  • Cell Adhesion
  • Cell Count
  • Cell Culture Techniques
  • Cell Line
  • Cell Movement / drug effects
  • Cell Tracking / methods*
  • Epithelial Cells / classification
  • Epithelial Cells / drug effects
  • Epithelial Cells / metabolism
  • Gene Regulatory Networks / drug effects
  • Humans
  • Microscopy, Video / methods
  • Pattern Recognition, Automated / methods*
  • Pyridoxal Phosphate / analogs & derivatives
  • Pyridoxal Phosphate / pharmacology
  • Signal Transduction / drug effects
  • Signal Transduction / genetics
  • Time-Lapse Imaging / methods*
  • Urothelium / cytology

Substances

  • pyridoxal phosphate-6-azophenyl-2',4'-disulfonic acid
  • Pyridoxal Phosphate
  • Adenosine Triphosphate