Sequence analysis of the gene encoding VP4 of a bovine group C rotavirus: molecular evidence for a new P genotype

Virus Genes. 1999;19(1):85-8. doi: 10.1023/a:1008196824879.

Abstract

Nucleotide sequence of the bovine group C rotavirus Shintoku strain gene 3 was determined. Segment 3 is 2253 nucleotides (nt) in length and contains a long open reading frame (ORF) beginning at nt 22 and terminating at nt 2223. This ORF encodes a polypeptide of 733 amino acids with a predicted molecular mass of 83 kDa. The deduced gene 3 amino acid sequence shares 79% and 73% identities with VP4 of the porcine Cowden and human Bristol strains, respectively. Lack of high amino acid sequence homology in VP4 of bovine, porcine, and human group C rotaviruses indicates that the Shintoku strain represents a new P genotype.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Capsid / chemistry
  • Capsid / genetics*
  • Capsid Proteins*
  • Cattle
  • Humans
  • Molecular Sequence Data
  • Reverse Transcriptase Polymerase Chain Reaction
  • Rotavirus / genetics*
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid

Substances

  • Capsid Proteins
  • VP4 protein, Rotavirus