Improving the carboligase activity of benzoylformate decarboxylase from Pseudomonas putida by a combination of directed evolution and site-directed mutagenesis

Protein Eng. 2002 Jul;15(7):585-93. doi: 10.1093/protein/15.7.585.

Abstract

Benzoylformate decarboxylase (BFD) from Pseudomonas putida was subjected to directed molecular evolution to generate mutants with increased carboligase activity which is a side reaction of the enzyme. After a single round of random mutagenesis mutants were isolated which exhibited a 5-fold increased carboligase activity in aqueous buffer compared to the wild-type enzyme with a high enantiomeric excess of the product (S)-2-hydroxy-1-phenyl-propanone. From the same library, mutants with enhanced carboligase activity in water-miscible organic solvents have been isolated. The selected mutants have been characterized by sequencing, revealing that all mutants carry a mutation at Leu476, which is close to the active site but does not directly interact with the active center. BFD-L476Q has a 5-fold higher carboligase activity than the wild-type enzyme. L476 was subjected to saturation mutagenesis yielding eight different mutants with up to 5-fold increased carboligase activity. Surprisingly, all L476 mutants catalyze the formation of 2-hydroxy-1-phenyl-propanone with significantly higher enantioselectivity than the wild-type enzyme although enantioselectivity was not a selection parameter. Leu476 potentially plays the role of a gatekeeper of the active site of BFD, possibly by controlling the release of the product. The biocatalyst could be significantly improved for its side reaction, the C-C bond formation and for application under conditions that are not optimized in nature.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution
  • Base Pairing / genetics
  • Carboxy-Lyases / genetics*
  • Carboxy-Lyases / metabolism*
  • Computer Graphics
  • Enzyme Stability
  • Evolution, Molecular
  • Gene Library
  • Ketones / chemistry
  • Kinetics
  • Ligases / metabolism
  • Models, Molecular
  • Mutagenesis, Site-Directed
  • Plasmids
  • Protein Binding
  • Pseudomonas putida / enzymology*
  • Stereoisomerism

Substances

  • Ketones
  • Carboxy-Lyases
  • benzoylformate decarboxylase
  • Ligases