Exon truncation by alternative splicing of murine ICAM-1

Physiol Genomics. 2002 Dec 26;12(1):47-51. doi: 10.1152/physiolgenomics.00073.2002. Epub 2002 Dec 26.

Abstract

The murine gene for intercellular adhesion molecule-1 (ICAM-1) encodes multiple products, arising from alternative splicing. Full-length ICAM-1 contains five extracellular Ig domains, each encoded by a separate exon. Alternatively spliced forms have Ig domains 2, 3, and/or 4 excised as a result of exon skipping. We report here a novel splice variant of murine ICAM-1, resulting from exon truncation rather than exon skipping and affecting Ig domain 5. A 5' splice donor site within exon 6 generates transcripts missing 69 nucleic acids from the 3' terminus of the exon. This in-frame exon truncation is predicted to replace 24 amino acids within Ig domain 5 with a single aspartic acid residue, yielding a structure other than an Ig domain immediately external to the membrane. Expression of this alternatively spliced form is induced in mouse lungs, spleen, and kidneys during LPS-induced pulmonary inflammation. Since the affected region is critical for ICAM-1 presentation, dimerization, and solubilization, this alternative splice variant may have unique physiological functions.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alternative Splicing*
  • Animals
  • Base Sequence
  • Conserved Sequence
  • Exons*
  • Immunoglobulins / chemistry
  • Intercellular Adhesion Molecule-1 / biosynthesis
  • Intercellular Adhesion Molecule-1 / chemistry
  • Intercellular Adhesion Molecule-1 / genetics*
  • Lung / metabolism
  • Mice
  • Mice, Inbred C57BL
  • Pneumonia / chemically induced
  • Pneumonia / genetics
  • Pneumonia / metabolism
  • Protein Isoforms / biosynthesis
  • Protein Isoforms / genetics
  • Protein Structure, Tertiary
  • RNA Splice Sites
  • Sequence Deletion
  • Sequence Homology, Nucleic Acid
  • Transcription, Genetic

Substances

  • Immunoglobulins
  • Protein Isoforms
  • RNA Splice Sites
  • Intercellular Adhesion Molecule-1