A novel zinc snap motif conveys structural stability to 3-methyladenine DNA glycosylase I

J Biol Chem. 2003 May 23;278(21):19442-6. doi: 10.1074/jbc.M300934200. Epub 2003 Mar 24.

Abstract

The Escherichia coli 3-methyladenine DNA glycosylase I (TAG) is a DNA repair enzyme that excises 3-methyladenine in DNA and is the smallest member of the helix-hairpin-helix (HhH) superfamily of DNA glycosylases. Despite many studies over the last 25 years, there has been no suggestion that TAG was a metalloprotein. However, here we establish by heteronuclear NMR and other spectroscopic methods that TAG binds 1 eq of Zn2+ extremely tightly. A family of refined NMR structures shows that 4 conserved residues contributed from the amino- and carboxyl-terminal regions of TAG (Cys4, His17, His175, and Cys179) form a Zn2+ binding site. The Zn2+ ion serves to tether the otherwise unstructured amino- and carboxyl-terminal regions of TAG. We propose that this unexpected "zinc snap" motif in the TAG family (CX(12-17)HX(approximately 150)HX(3)C) serves to stabilize the HhH domain thereby mimicking the functional role of protein-protein interactions in larger HhH superfamily members.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Bacteria / enzymology
  • Binding Sites
  • Cobalt
  • Conserved Sequence
  • Cysteine / metabolism
  • DNA Glycosylases*
  • DNA Repair
  • Escherichia coli / enzymology
  • Histidine / metabolism
  • Magnetic Resonance Spectroscopy
  • Models, Molecular
  • Molecular Sequence Data
  • Molecular Structure
  • N-Glycosyl Hydrolases / chemistry*
  • N-Glycosyl Hydrolases / metabolism
  • Sequence Alignment
  • Spectrophotometry, Atomic
  • Spectrophotometry, Ultraviolet
  • Zinc / chemistry*
  • Zinc / metabolism
  • Zinc Fingers

Substances

  • Cobalt
  • Histidine
  • 3-methyladenine-DNA glycosylase
  • DNA Glycosylases
  • N-Glycosyl Hydrolases
  • Zinc
  • Cysteine

Associated data

  • PDB/1NKU