Structural investigation of the HIV-1 envelope glycoprotein gp160 cleavage site, 2: relevance of an N-terminal helix

Chembiochem. 2003 Aug 4;4(8):727-33. doi: 10.1002/cbic.200200541.

Abstract

Proteolytic activation of the HIV-1 envelope glycoprotein gp160 is selectively performed by the proprotein convertase furin at the C-terminus of the sequence R508-E-K-R511 (site 1), in spite of the presence of another consensus sequence, Lys500-Ala-Lys-Arg503 (site 2). On the basis of the solution structural analysis of the synthetic peptide p498, spanning the gp160 sequence Pro498-Gly516, we previously suggested a possible role of an N-terminal helix in regulating the exposure and accessibility of the gp160 physiological cleavage site, enclosed in a loop. Here we report on the activity and conformation of the 23-residue peptide h-REKR, designed to exhibit a large N-terminal helix, followed by the gp160 native sequence, Arg508-Gly516. h-REKR is digested by furin with high efficiency, comparable to the full native p498. Circular dichroism analyses, in mixtures from pure water to 98 % trifluoroethanol, outline a significant content of helical structure in the peptide conformation. The molecular model obtained from NMR data collected in trifluoroethanol/water, by means of DYANA and AMBER simulations, indeed has helical structure on a large N-terminal segment. Such a long helix does not seem to affect the loop conformation of the C-terminal site 1-containing sequence, which exhibits the same proton chemical shifts already observed for the full native p498.

MeSH terms

  • Amino Acid Sequence
  • Catalytic Domain
  • Circular Dichroism
  • Consensus Sequence
  • Furin
  • HIV Envelope Protein gp160 / chemistry*
  • HIV Envelope Protein gp160 / metabolism
  • HIV Infections / metabolism
  • HIV Infections / virology
  • HIV-1 / chemistry*
  • Humans
  • Models, Molecular
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular
  • Peptide Fragments / chemistry*
  • Protein Conformation*
  • Sequence Homology, Amino Acid
  • Subtilisins / chemistry*
  • Subtilisins / metabolism

Substances

  • HIV Envelope Protein gp160
  • Peptide Fragments
  • Subtilisins
  • Furin