A stereoselective carbon-nitrogen lyase from Ralstonia sp. SLRS7 cleaves two of three isomers of iminodisuccinate

Biodegradation. 2004 Aug;15(4):229-39. doi: 10.1023/b:biod.0000042903.04718.f6.

Abstract

Following biodegradation tests according to the OECD guidelines for testing of chemicals 301F different degradation rates were observed for the three stereoisomers of iminodisuccinate (IDS). A strain was isolated from activated sludge, which used two of three isomers, R,S-IDS and S,S-IDS, as sole source of carbon, nitrogen, and energy. The isolated strain was identified by 16S-rDNA and referred to as Ralstonia sp. SLRS7. An IDS-degrading lyase was isolated from the cell-free extract. The enzyme was purified by three chromatographic steps, which included anion-exchange chromatography, hydrophobic interaction chromatography and gel filtration. The lyase catalysed the non-hydrolytic cleavage of IDS without requirement of any cofactors. Cleavage of S,S-IDS led to the formation of fumaric acid and L-aspartic acid. Interestingly R,S-IDS yielded only D-aspartic acid besides fumaric acid. R,R-IDS was not transformed. Thus, the IDS-degrading enzyme is a carbon-nitrogen lyase attacking only the asymmetric carbon atom exhibiting the S-configuration. Besides S,S-IDS and R,S-IDS cleavage, the lyase catalysed also the transformation of certain S,S-IDS metal complexes, namely Ca(2+)-, Mg(2+)- and Mn(2+)-IDS. The maximum enzyme activity was found at pH 8.0-8.5 and 35 degrees C. SDS-PAGE analysis revealed a single 57-kDa protein band. The native enzyme was estimated to be around 240 kDa indicating a homotetramer enzyme.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acids / chemistry*
  • Amino Acids / metabolism
  • Biodegradation, Environmental
  • Carbon-Nitrogen Lyases / isolation & purification*
  • Carbon-Nitrogen Lyases / metabolism
  • Chromatography, Gel
  • Chromatography, Ion Exchange
  • Culture Media
  • Edetic Acid / chemistry
  • Ethylenediamines / chemistry
  • Molecular Structure
  • Molecular Weight
  • Ralstonia / enzymology
  • Ralstonia / isolation & purification
  • Sewage / microbiology
  • Stereoisomerism
  • Substrate Specificity
  • Succinates / chemistry*
  • Succinates / metabolism

Substances

  • (S,S)-ethylenediaminedisuccinate
  • Amino Acids
  • Culture Media
  • Ethylenediamines
  • Sewage
  • Succinates
  • iminodisuccinic acid
  • Edetic Acid
  • Carbon-Nitrogen Lyases