Application of cation-exchange membranes for characterisation and imaging ammonia-oxidising bacteria in soils

FEMS Microbiol Ecol. 2005 Aug 1;53(3):463-72. doi: 10.1016/j.femsec.2005.02.001.

Abstract

A new approach, in which ammonia-oxidizing bacteria (AOB) are entrapped from soil onto cation-exchange membranes, was applied to identify terrestrial AOB by fluorescence in situ hybridization (FISH). An experimental hot spot of ammonia oxidation was developed by establishing a gradient of ammonium substrate (200 to <20 mg NH4+-N l(-1)) diffused through the cation-exchange membranes incubated in soil for 6 months. By this approach we were able to characterise and image indigenous AOB populations growing in heavily oil-polluted soil using FISH and sequence analysis of PCR-amplified 16S rRNA genes, respectively. The FISH results revealed that Nitrosospira-like AOB were dominant on the ammonium-enriched membranes incubated in the soil. Fourteen unique Nitrosospira-like 16S rRNA gene sequences belonging to clusters 2 and 3 were recovered from the soil-incubated membranes and from the soil, suggesting the importance of Nitrosospira-like AOB in the oil-polluted landfarming soil.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Ammonia / metabolism*
  • Betaproteobacteria / classification
  • Betaproteobacteria / genetics
  • Betaproteobacteria / isolation & purification*
  • Betaproteobacteria / metabolism
  • Cation Exchange Resins
  • Colony Count, Microbial
  • DNA, Bacterial / genetics
  • DNA, Bacterial / isolation & purification
  • Finland
  • In Situ Hybridization, Fluorescence
  • Industrial Waste
  • Membranes, Artificial
  • Oxidation-Reduction
  • Petroleum*
  • RNA, Bacterial / genetics
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Soil Microbiology*
  • Soil Pollutants / metabolism*

Substances

  • Cation Exchange Resins
  • DNA, Bacterial
  • Industrial Waste
  • Membranes, Artificial
  • Petroleum
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Soil Pollutants
  • Ammonia