Solvent-tuning the collapse and helix formation time scales of lambda(6-85)*

Protein Sci. 2006 Nov;15(11):2596-604. doi: 10.1110/ps.062257406.

Abstract

The lambda(6-85)(*) pseudo-wild type of lambda repressor fragment is a fast two-state folder (k(f) approximately 35 microsec(-1) at 58 degrees C). Previously, highly stable lambda(6-85)(*) mutants with k(f) > 30 microsec(-1) have been engineered to fold nearly or fully downhill. Stabilization of the native state by solvent tuning might also tune lambda(6-85)(*) away from two-state folding. We test this prediction by examining the folding thermodynamics and kinetics of lambda(6-85)(*) in a stabilizing solvent, 45% by weight aqueous ethylene glycol at -28 degrees C. Detection of kinetics by circular dichroism at 222 nm (sensitive to helix content) and small angle X-ray scattering (measuring the radius of gyration) shows that refolding from guanidine hydrochloride denatured conditions exhibits very different time scales for collapse and secondary structure formation: the two processes become decoupled. Collapse remains a low-barrier activated process, while the fastest of several secondary structure formation time scales approaches the downhill folding limit. Two-state folding of lambda(6-85)(*) is not a robust process.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Circular Dichroism / methods
  • DNA-Binding Proteins / chemistry*
  • DNA-Binding Proteins / drug effects*
  • Models, Molecular
  • Mutant Proteins / chemistry
  • Protein Folding
  • Protein Structure, Secondary / drug effects*
  • Repressor Proteins / chemistry*
  • Repressor Proteins / drug effects*
  • Solvents / pharmacology*
  • Thermodynamics
  • Viral Proteins / chemistry*
  • Viral Proteins / drug effects*
  • Viral Regulatory and Accessory Proteins
  • X-Ray Diffraction / methods

Substances

  • DNA-Binding Proteins
  • Mutant Proteins
  • Repressor Proteins
  • Solvents
  • Viral Proteins
  • Viral Regulatory and Accessory Proteins
  • phage repressor proteins