RNA secondary structure analysis using RNAstructure

Curr Protoc Bioinformatics. 2006 Mar:Chapter 12:Unit 12.6. doi: 10.1002/0471250953.bi1206s13.

Abstract

RNAstructure is a user-friendly program for the prediction and analysis of RNA secondary structure under Microsoft Windows. This unit provides protocols for RNA secondary structure prediction and prediction of high-affinity oligonucleotide binding sites to a structured RNA target.

MeSH terms

  • Algorithms*
  • Base Sequence
  • Binding Sites
  • Computer Simulation
  • Gene Targeting / methods*
  • Models, Chemical*
  • Models, Molecular
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • RNA / genetics*
  • RNA / ultrastructure*
  • Sequence Analysis, RNA / methods*
  • Software*

Substances

  • RNA