Solution NMR mapping of water-accessible residues in the transmembrane beta-barrel of OmpX

Eur Biophys J. 2010 Mar;39(4):623-30. doi: 10.1007/s00249-009-0513-2. Epub 2009 Jul 29.

Abstract

The atomic structure of OmpX, the smallest member of the bacterial outer membrane protein family, has been previously established by X-ray crystallography and NMR spectroscopy. In apparent conflict with electrophysiological studies, the lumen of its transmembrane beta-barrel appears too tightly packed with amino acid side chains to let any solute flow through. In the present study, high-resolution solution NMR spectra were obtained of OmpX kept water-soluble by either amphipol A8-35 or the detergent dihexanoylphosphatidylcholine. Hydrogen/deuterium exchange measurements performed after prolonged equilibration show that, whatever the surfactant used, some of the amide protons of the membrane-spanning region exchange much more readily than others, which likely reflects the dynamics of the barrel.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Outer Membrane Proteins / chemistry*
  • Cell Membrane*
  • Detergents / chemistry
  • Deuterium Exchange Measurement
  • Escherichia coli Proteins / chemistry*
  • Hydrolases / chemistry*
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular*
  • Phosphatidylcholines / chemistry
  • Polymers / chemistry
  • Propylamines / chemistry
  • Protein Structure, Secondary
  • Solvents / chemistry
  • Water / chemistry*

Substances

  • Bacterial Outer Membrane Proteins
  • Detergents
  • Escherichia coli Proteins
  • Phosphatidylcholines
  • Polymers
  • Propylamines
  • Solvents
  • amphipol A8-35
  • Water
  • OmpX protein, E coli
  • 1,2-hexanoylphosphatidylcholine
  • Hydrolases