Role of the ubiquitin-binding domain of Polη in Rad18-independent translesion DNA synthesis in human cell extracts

Nucleic Acids Res. 2010 Oct;38(19):6456-65. doi: 10.1093/nar/gkq403. Epub 2010 Jun 6.

Abstract

In eukaryotic cells, the Rad6/Rad18-dependent monoubiquitination of the proliferating cell nuclear antigen (PCNA) plays an essential role in the switching between replication and translesion DNA synthesis (TLS). The DNA polymerase Polη binds to PCNA via a consensus C-terminal PCNA-interacting protein (PIP) motif. It also specifically interacts with monoubiquitinated PCNA thanks to a recently identified ubiquitin-binding domain (UBZ). To investigate whether the TLS activity of Polη is always coupled to PCNA monoubiquitination, we monitor the ability of cell-free extracts to perform DNA synthesis across different types of lesions. We observe that a cis-syn cyclobutane thymine dimer (TT-CPD), but not a N-2-acetylaminofluorene-guanine (G-AAF) adduct, is efficiently bypassed in extracts from Rad18-deficient cells, thus demonstrating the existence of a Polη-dependent and Rad18-independent TLS pathway. In addition, by complementing Polη-deficient cells with PIP and UBZ mutants, we show that each of these domains contributes to Polη activity. The finding that the bypass of a CPD lesion in vitro does not require Ub-PCNA but nevertheless depends on the UBZ domain of Polη, reveals that this domain may play a novel role in the TLS process that is not related to the monoubiquitination status of PCNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Extracts
  • Cell Line
  • Cell Survival / radiation effects
  • DNA / biosynthesis*
  • DNA Adducts / chemistry
  • DNA Damage*
  • DNA-Binding Proteins / genetics
  • DNA-Binding Proteins / physiology*
  • DNA-Directed DNA Polymerase / chemistry*
  • DNA-Directed DNA Polymerase / genetics
  • DNA-Directed DNA Polymerase / metabolism*
  • Gene Knockout Techniques
  • Humans
  • Mutation
  • Protein Structure, Tertiary
  • Pyrimidine Dimers / chemistry
  • Ubiquitin / metabolism
  • Ubiquitin-Protein Ligases
  • Ultraviolet Rays

Substances

  • Cell Extracts
  • DNA Adducts
  • DNA-Binding Proteins
  • Pyrimidine Dimers
  • RAD18 protein, human
  • Ubiquitin
  • DNA
  • Ubiquitin-Protein Ligases
  • DNA-Directed DNA Polymerase
  • Rad30 protein