A dumbbell probe-mediated rolling circle amplification strategy for highly sensitive microRNA detection

Nucleic Acids Res. 2010 Aug;38(15):e156. doi: 10.1093/nar/gkq556. Epub 2010 Jun 14.

Abstract

We herein report the design of a dumbbell-shaped DNA probe that integrates target-binding, amplification and signaling within one multifunctional design. The dumbbell probe can initiate rolling circle amplification (D-RCA) in the presence of specific microRNA (miRNA) targets. This D-RCA-based miRNA strategy allows quantification of miRNA with very low quantity of RNA samples. The femtomolar sensitivity of D-RCA compares favorably with other existing technologies. More significantly, the dynamic range of D-RCA is extremely large, covering eight orders of magnitude. We also demonstrate miRNA quantification with this highly sensitive and inexpensive D-RCA strategy in clinical samples.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Benzothiazoles
  • Biomarkers, Tumor / analysis
  • DNA Probes / chemistry*
  • Diamines
  • Fluorescent Dyes
  • Humans
  • MicroRNAs / analysis*
  • Nucleic Acid Conformation
  • Organic Chemicals
  • Quinolines
  • Spectrometry, Fluorescence

Substances

  • Benzothiazoles
  • Biomarkers, Tumor
  • DNA Probes
  • Diamines
  • Fluorescent Dyes
  • MicroRNAs
  • Organic Chemicals
  • Quinolines
  • SYBR Green I