An efficient system for let-7 microRNA and GW182 protein-mediated deadenylation in vitro

Methods Mol Biol. 2011:725:207-17. doi: 10.1007/978-1-61779-046-1_14.

Abstract

Experiments with cell cultures have been useful in analyzing microRNA action. However, miRNA-mediated effects are often assayed many hours or days after miRNA target recognition. Consequently, this has made it difficult to analyze early events of miRNA-mediated repression. The development of cell-free systems that recapitulate miRNA action in vitro has been instrumental in dissecting the molecular mechanisms of miRNA action. Here we describe such a system, derived from mouse Krebs II ascites carcinoma cells, termed Krebs cell-free system. As an example, the protocol for assaying let-7 and GW182 (TNRC6) protein-mediated deadenylation of mRNA in vitro is described.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Cell-Free System
  • Gene Order
  • Isotope Labeling
  • Mice
  • MicroRNAs / genetics*
  • MicroRNAs / metabolism*
  • Models, Biological
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • RNA-Binding Proteins / metabolism*

Substances

  • MicroRNAs
  • RNA, Messenger
  • RNA-Binding Proteins