Structural dynamics, intrinsic disorder, and allostery in nuclear receptors as transcription factors

J Biol Chem. 2011 Nov 18;286(46):39675-82. doi: 10.1074/jbc.R111.278929. Epub 2011 Sep 21.

Abstract

Steroid hormone receptors (SHRs) and nuclear receptors (NRs) in general are flexible, allosterically regulated transcription factors. The classic model is inadequate to explain all their behavior. Keys to function are their regions of intrinsic disorder (ID). Data show the dynamic structure and allosteric interactions of the three classic SHR domains: ligand-binding (LBD), DNA-binding (DBD), and N-terminal (NTD). Each responds to its ligands by stabilizing its structure. The LBD responds to classic steroidal and nonsteroidal small ligands; both may selectively modify SHR activity. The DBD responds differentially to the DNA sequences of its response elements. The NTD, with its high ID content and AF1, interacts allosterically with the LBD and DBD. Each domain binds heterologous proteins, potential allosteric ligands. An ensemble framework improves the classic model, shows how ID regions poise the SHR/NR family for optimal allosteric response, and provides a basis for quantitative evaluation of SHR/NR actions.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Review

MeSH terms

  • Allosteric Regulation / physiology
  • Animals
  • Humans
  • Ligands
  • Protein Structure, Tertiary
  • Receptors, Steroid / chemistry
  • Receptors, Steroid / metabolism*
  • Response Elements / physiology*
  • Structure-Activity Relationship
  • Transcription Factors / chemistry
  • Transcription Factors / metabolism*

Substances

  • Ligands
  • Receptors, Steroid
  • Transcription Factors