Design and exploration of novel boronic acid inhibitors reveals important interactions with a clavulanic acid-resistant sulfhydryl-variable (SHV) β-lactamase

J Med Chem. 2013 Feb 14;56(3):1084-97. doi: 10.1021/jm301490d. Epub 2013 Feb 4.

Abstract

Inhibitor resistant (IR) class A β-lactamases pose a significant threat to many current antibiotic combinations. The K234R substitution in the SHV β-lactamase, from Klebsiella pneumoniae , results in resistance to ampicillin/clavulanate. After site-saturation mutagenesis of Lys-234 in SHV, microbiological and biochemical characterization of the resulting β-lactamases revealed that only -Arg conferred resistance to ampicillin/clavulanate. X-ray crystallography revealed two conformations of Arg-234 and Ser-130 in SHV K234R. The movement of Ser-130 is the principal cause of the observed clavulanate resistance. A panel of boronic acid inhibitors was designed and tested against SHV-1 and SHV K234R. A chiral ampicillin analogue was discovered to have a 2.4 ± 0.2 nM K(i) for SHV K234R; the chiral ampicillin analogue formed a more complex hydrogen-bonding network in SHV K234R vs SHV-1. Consideration of the spatial position of Ser-130 and Lys-234 and this hydrogen-bonding network will be important in the design of novel antibiotics targeting IR β-lactamases.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Boronic Acids / chemistry
  • Boronic Acids / pharmacology
  • Circular Dichroism
  • Clavulanic Acid / pharmacology*
  • Crystallography, X-Ray
  • Drug Design
  • Kinetics
  • Microbial Sensitivity Tests
  • Models, Molecular
  • Molecular Dynamics Simulation
  • Mutagenesis
  • Protein Structure, Secondary
  • Spectrometry, Mass, Electrospray Ionization
  • Sulfhydryl Compounds / pharmacology*
  • beta-Lactamase Inhibitors*
  • beta-Lactamases / chemistry

Substances

  • Boronic Acids
  • Sulfhydryl Compounds
  • beta-Lactamase Inhibitors
  • Clavulanic Acid
  • beta-Lactamases

Associated data

  • PDB/4FCF