Zinc finger nuclease mediated knockout of ADP-dependent glucokinase in cancer cell lines: effects on cell survival and mitochondrial oxidative metabolism

PLoS One. 2013 Jun 14;8(6):e65267. doi: 10.1371/journal.pone.0065267. Print 2013.

Abstract

Zinc finger nucleases (ZFN) are powerful tools for editing genes in cells. Here we use ZFNs to interrogate the biological function of ADPGK, which encodes an ADP-dependent glucokinase (ADPGK), in human tumour cell lines. The hypothesis we tested is that ADPGK utilises ADP to phosphorylate glucose under conditions where ATP becomes limiting, such as hypoxia. We characterised two ZFN knockout clones in each of two lines (H460 and HCT116). All four clones had frameshift mutations in all alleles at the target site in exon 1 of ADPGK, and were ADPGK-null by immunoblotting. ADPGK knockout had little or no effect on cell proliferation, but compromised the ability of H460 cells to survive siRNA silencing of hexokinase-2 under oxic conditions, with clonogenic survival falling from 21±3% for the parental line to 6.4±0.8% (p = 0.002) and 4.3±0.8% (p = 0.001) for the two knockouts. A similar increased sensitivity to clonogenic cell killing was observed under anoxia. No such changes were found when ADPGK was knocked out in HCT116 cells, for which the parental line was less sensitive than H460 to anoxia and to hexokinase-2 silencing. While knockout of ADPGK in HCT116 cells caused few changes in global gene expression, knockout of ADPGK in H460 cells caused notable up-regulation of mRNAs encoding cell adhesion proteins. Surprisingly, we could discern no consistent effect on glycolysis as measured by glucose consumption or lactate formation under anoxia, or extracellular acidification rate (Seahorse XF analyser) under oxic conditions in a variety of media. However, oxygen consumption rates were generally lower in the ADPGK knockouts, in some cases markedly so. Collectively, the results demonstrate that ADPGK can contribute to tumour cell survival under conditions of high glycolytic dependence, but the phenotype resulting from knockout of ADPGK is cell line dependent and appears to be unrelated to priming of glycolysis in these lines.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Cell Hypoxia
  • Cell Proliferation
  • Cell Survival*
  • Deoxyribonucleases, Type II Site-Specific / chemistry*
  • Female
  • Frameshift Mutation
  • Gene Dosage
  • Gene Knockout Techniques
  • Genetic Engineering / methods
  • Glucokinase / genetics*
  • Glucokinase / metabolism
  • Glycolysis
  • HCT116 Cells
  • Hexokinase / genetics
  • Hexokinase / metabolism
  • Humans
  • Mice
  • Mice, Nude
  • Mitochondria / metabolism*
  • Molecular Sequence Data
  • Neoplasm Transplantation
  • Oxidative Phosphorylation*
  • Oxygen Consumption
  • Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha
  • Transcription Factors / genetics
  • Transcription Factors / metabolism
  • Transcriptome
  • Tumor Burden

Substances

  • PPARGC1A protein, human
  • Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha
  • Transcription Factors
  • ADP-dependent glucokinase
  • Hexokinase
  • Glucokinase
  • endodeoxyribonuclease FokI
  • Deoxyribonucleases, Type II Site-Specific

Grants and funding

This study was supported by the Royal Society of New Zealand Marsden Fund (www.royalsociety.org.nz/programmes/funds/marsden/). SLM is supported by a National Health and Medical Research Council (NHMRC) Career Development Fellowship and project grants from the NHMRC (1027226 and 1027227). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.