Challenges in DNA motion control and sequence readout using nanopore devices

Nanotechnology. 2015 Feb 20;26(7):074004. doi: 10.1088/0957-4484/26/7/074004. Epub 2015 Feb 2.

Abstract

Nanopores are being hailed as a potential next-generation DNA sequencer that could provide cheap, high-throughput DNA analysis. In this review we present a detailed summary of the various sensing techniques being investigated for use in DNA sequencing and mapping applications. A crucial impasse to the success of nanopores as a reliable DNA analysis tool is the fast and stochastic nature of DNA translocation. We discuss the incorporation of biological motors to step DNA through a pore base-by-base, as well as the many experimental modifications attempted for the purpose of slowing and controlling DNA transport.

Publication types

  • Research Support, N.I.H., Extramural
  • Review

MeSH terms

  • Biosensing Techniques / methods*
  • DNA / chemistry*
  • DNA Damage
  • Electrochemistry
  • Electronics
  • Enzymes / chemistry
  • Graphite / chemistry
  • Hemolysin Proteins / chemistry
  • Humans
  • Ions / chemistry
  • Motion
  • Nanopores*
  • Nanotechnology / methods*
  • Nanotubes, Carbon / chemistry
  • Sequence Analysis, DNA
  • Stochastic Processes

Substances

  • Enzymes
  • Hemolysin Proteins
  • Ions
  • Nanotubes, Carbon
  • Graphite
  • DNA