Neuronal Calcium Sensor-1 Binds the D2 Dopamine Receptor and G-protein-coupled Receptor Kinase 1 (GRK1) Peptides Using Different Modes of Interactions

J Biol Chem. 2015 Jul 24;290(30):18744-56. doi: 10.1074/jbc.M114.627059. Epub 2015 May 15.

Abstract

Neuronal calcium sensor-1 (NCS-1) is the primordial member of the neuronal calcium sensor family of EF-hand Ca(2+)-binding proteins. It interacts with both the G-protein-coupled receptor (GPCR) dopamine D2 receptor (D2R), regulating its internalization and surface expression, and the cognate kinases GRK1 and GRK2. Determination of the crystal structures of Ca(2+)/NCS-1 alone and in complex with peptides derived from D2R and GRK1 reveals that the differential recognition is facilitated by the conformational flexibility of the C-lobe-binding site. We find that two copies of the D2R peptide bind within the hydrophobic crevice on Ca(2+)/NCS-1, but only one copy of the GRK1 peptide binds. The different binding modes are made possible by the C-lobe-binding site of NCS-1, which adopts alternative conformations in each complex. C-terminal residues Ser-178-Val-190 act in concert with the flexible EF3/EF4 loop region to effectively form different peptide-binding sites. In the Ca(2+)/NCS-1·D2R peptide complex, the C-terminal region adopts a 310 helix-turn-310 helix, whereas in the GRK1 peptide complex it forms an α-helix. Removal of Ser-178-Val-190 generated a C-terminal truncation mutant that formed a dimer, indicating that the NCS-1 C-terminal region prevents NCS-1 oligomerization. We propose that the flexible nature of the C-terminal region is essential to allow it to modulate its protein-binding sites and adapt its conformation to accommodate both ligands. This appears to be driven by the variability of the conformation of the C-lobe-binding site, which has ramifications for the target specificity and diversity of NCS-1.

Keywords: D2 dopamine receptor; G protein-coupled receptor (GPCR); GRK1; calcium; dopamine; neuronal calcium sensor-1; receptor internalization; x-ray crystallography.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence / genetics
  • Binding Sites
  • Calcium / metabolism*
  • Calcium-Binding Proteins / chemistry
  • Calcium-Binding Proteins / genetics
  • Calcium-Binding Proteins / metabolism*
  • Crystallography, X-Ray
  • Dopamine / genetics
  • Dopamine / metabolism
  • G-Protein-Coupled Receptor Kinase 1 / chemistry*
  • G-Protein-Coupled Receptor Kinase 1 / genetics
  • G-Protein-Coupled Receptor Kinase 1 / metabolism
  • Humans
  • Neuronal Calcium-Sensor Proteins / chemistry
  • Neuronal Calcium-Sensor Proteins / genetics
  • Neuronal Calcium-Sensor Proteins / metabolism*
  • Neuropeptides / chemistry
  • Neuropeptides / genetics
  • Neuropeptides / metabolism*
  • Peptides / chemistry
  • Peptides / genetics
  • Peptides / metabolism
  • Protein Binding
  • Protein Structure, Secondary / genetics
  • Receptors, Dopamine D2 / chemistry*
  • Receptors, Dopamine D2 / genetics
  • Receptors, Dopamine D2 / metabolism
  • Signal Transduction / genetics

Substances

  • Calcium-Binding Proteins
  • DRD2 protein, human
  • Neuronal Calcium-Sensor Proteins
  • Neuropeptides
  • Peptides
  • Receptors, Dopamine D2
  • frequenin calcium sensor proteins
  • G-Protein-Coupled Receptor Kinase 1
  • GRK1 protein, human
  • Calcium
  • Dopamine

Associated data

  • PDB/1G8I
  • PDB/2I2R
  • PDB/2I94
  • PDB/2JU0
  • PDB/2NZ0
  • PDB/4YRU
  • PDB/5AEQ
  • PDB/5AER
  • PDB/5AFP