Aberrant splicing in maize rough endosperm3 reveals a conserved role for U12 splicing in eukaryotic multicellular development

Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):E2195-E2204. doi: 10.1073/pnas.1616173114. Epub 2017 Feb 27.

Abstract

RNA splicing of U12-type introns functions in human cell differentiation, but it is not known whether this class of introns has a similar role in plants. The maize ROUGH ENDOSPERM3 (RGH3) protein is orthologous to the human splicing factor, ZRSR2. ZRSR2 mutations are associated with myelodysplastic syndrome (MDS) and cause U12 splicing defects. Maize rgh3 mutants have aberrant endosperm cell differentiation and proliferation. We found that most U12-type introns are retained or misspliced in rgh3 Genes affected in rgh3 and ZRSR2 mutants identify cell cycle and protein glycosylation as common pathways disrupted. Transcripts with retained U12-type introns can be found in polysomes, suggesting that splicing efficiency can alter protein isoforms. The rgh3 mutant protein disrupts colocalization with a known ZRSR2-interacting protein, U2AF2. These results indicate conserved function for RGH3/ZRSR2 in U12 splicing and a deeply conserved role for the minor spliceosome to promote cell differentiation from stem cells to terminal fates.

Keywords: cell differentiation; maize endosperm; minor spliceosome; myelodysplastic syndrome; stem cell.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Alternative Splicing
  • Amino Acid Sequence
  • Conserved Sequence
  • Endosperm / genetics
  • Eukaryotic Cells / metabolism
  • Gene Expression Regulation, Plant
  • Genes, Plant*
  • Humans
  • Introns
  • Mutation
  • Nucleotide Motifs
  • Phosphorylation
  • Position-Specific Scoring Matrices
  • Protein Transport
  • RNA Isoforms
  • RNA Splice Sites
  • RNA Splicing*
  • RNA, Small Nuclear*
  • Splicing Factor U2AF / genetics
  • Splicing Factor U2AF / metabolism
  • Zea mays / genetics*
  • Zea mays / metabolism

Substances

  • RNA Isoforms
  • RNA Splice Sites
  • RNA, Small Nuclear
  • Splicing Factor U2AF
  • U12 small nuclear RNA
  • U2AF2 protein, human