Deciphering the role of microRNA - A step by step guide

Gene Expr Patterns. 2017 Nov:25-26:59-65. doi: 10.1016/j.gep.2017.06.002. Epub 2017 Jun 8.

Abstract

MicroRNAs (miRNAs), are small non-coding RNAs of approximately 22 nucleotides in length, playing an important role in regulating gene expression post-transcriptionally. Understanding the effect of miRNA regulation in a pathway-specific manner unravels the approaches adopted to apprehend biological mechanisms, the information, which is scanty for researchers, not primed already for miR related research. Here, we describe a quick perspective in 5 steps with probable approaches and assays at every level to unravel the specific role of a microRNA, miR-145a-5p, as an example. This perspective as a guide would help in identifying novel targets for a microRNA, as shown for miR-145a-5p, which down-regulated the mRNA expression of ADD3 and BRCA2, using bioinformatic tools and experimental assays.

Keywords: Bioinformatics tools; Cancer metabolism; Pathway study; Regulation; microRNA; microRNA targets.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Computational Biology / methods*
  • Down-Regulation
  • HeLa Cells
  • Hep G2 Cells
  • Humans
  • MCF-7 Cells
  • MicroRNAs / genetics*
  • RNA, Messenger / genetics*

Substances

  • MicroRNAs
  • RNA, Messenger