A viral protein antibiotic inhibits lipid II flippase activity

Nat Microbiol. 2017 Nov;2(11):1480-1484. doi: 10.1038/s41564-017-0023-4. Epub 2017 Sep 11.

Abstract

For bacteriophage infections, the cell walls of bacteria, consisting of a single highly polymeric molecule of peptidoglycan (PG), pose a major problem for the release of progeny virions. Phage lysis proteins that overcome this barrier can point the way to new antibacterial strategies 1 , especially small lytic single-stranded DNA (the microviruses) and RNA phages (the leviviruses) that effect host lysis using a single non-enzymatic protein 2 . Previously, the A2 protein of levivirus Qβ and the E protein of the microvirus ϕX174 were shown to be 'protein antibiotics' that inhibit the MurA and MraY steps of the PG synthesis pathway 2-4 . Here, we investigated the mechanism of action of an unrelated lysis protein, LysM, of the Escherichia coli levivirus M 5 . We show that LysM inhibits the translocation of the final lipid-linked PG precursor called lipid II across the cytoplasmic membrane by interfering with the activity of MurJ. The finding that LysM inhibits a distinct step in the PG synthesis pathway from the A2 and E proteins indicates that small phages, particularly the single-stranded RNA (ssRNA) leviviruses, have a previously unappreciated capacity for evolving novel inhibitors of PG biogenesis despite their limited coding potential.

MeSH terms

  • Anti-Bacterial Agents / chemistry
  • Anti-Bacterial Agents / metabolism
  • Bacteriolysis / genetics
  • Cell Membrane / metabolism
  • Cell Wall / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / virology*
  • Escherichia coli Proteins / antagonists & inhibitors*
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism
  • Levivirus / metabolism*
  • Peptidoglycan / biosynthesis*
  • Peptidoglycan / metabolism
  • Phospholipid Transfer Proteins / antagonists & inhibitors*
  • Phospholipid Transfer Proteins / chemistry
  • Phospholipid Transfer Proteins / genetics
  • Phospholipid Transfer Proteins / metabolism
  • Protein Conformation
  • Uridine Diphosphate N-Acetylmuramic Acid / analogs & derivatives*
  • Uridine Diphosphate N-Acetylmuramic Acid / metabolism
  • Viral Proteins / genetics
  • Viral Proteins / metabolism*
  • Virion

Substances

  • Anti-Bacterial Agents
  • Escherichia coli Proteins
  • MurJ protein, E coli
  • Peptidoglycan
  • Phospholipid Transfer Proteins
  • Uridine Diphosphate N-Acetylmuramic Acid
  • Viral Proteins
  • muramyl-NAc-(pentapeptide)pyrophosphoryl-undecaprenol