A Modular Receptor Platform To Expand the Sensing Repertoire of Bacteria

ACS Synth Biol. 2018 Jan 19;7(1):166-175. doi: 10.1021/acssynbio.7b00266. Epub 2017 Oct 30.

Abstract

Engineered bacteria promise to revolutionize diagnostics and therapeutics, yet many applications are precluded by the limited number of detectable signals. Here we present a general framework to engineer synthetic receptors enabling bacterial cells to respond to novel ligands. These receptors are activated via ligand-induced dimerization of a single-domain antibody fused to monomeric DNA-binding domains (split-DBDs). Using E. coli as a model system, we engineer both transmembrane and cytosolic receptors using a VHH for ligand detection and demonstrate the scalability of our platform by using the DBDs of two different transcriptional regulators. We provide a method to optimize receptor behavior by finely tuning protein expression levels and optimizing interdomain linker regions. Finally, we show that these receptors can be connected to downstream synthetic gene circuits for further signal processing. The general nature of the split-DBD principle and the versatility of antibody-based detection should support the deployment of these receptors into various hosts to detect ligands for which no receptor is found in nature.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / genetics
  • Caffeine / pharmacology
  • Cell Wall / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism*
  • Escherichia coli Proteins / chemistry
  • Escherichia coli Proteins / genetics
  • Gene Expression / drug effects
  • Genetic Engineering
  • Plasmids / genetics
  • Plasmids / metabolism
  • Promoter Regions, Genetic
  • Protein Domains / genetics
  • Receptors, Cytoplasmic and Nuclear / genetics
  • Receptors, Cytoplasmic and Nuclear / metabolism*
  • Recombinant Fusion Proteins / biosynthesis
  • Recombinant Fusion Proteins / genetics
  • Serine Endopeptidases / genetics
  • Single-Domain Antibodies / genetics
  • Trans-Activators / chemistry
  • Trans-Activators / genetics

Substances

  • Bacterial Proteins
  • CadC protein, E coli
  • Escherichia coli Proteins
  • LexA protein, Bacteria
  • Receptors, Cytoplasmic and Nuclear
  • Recombinant Fusion Proteins
  • Single-Domain Antibodies
  • Trans-Activators
  • Caffeine
  • Serine Endopeptidases