Hymenobacter rivuli sp. nov., isolated from a freshwater creek

Int J Syst Evol Microbiol. 2018 Apr;68(4):1220-1226. doi: 10.1099/ijsem.0.002657. Epub 2018 Mar 5.

Abstract

A bright-red bacterial strain, TAPP3T, was isolated from a freshwater sample taken from the Wanan Creek in Taiwan. Phylogenetic analyses based on 16S rRNA gene sequences revealed that TAPP3T represented a member of the genus Hymenobacter and showed the highest levels of sequence similarity to Hymenobacter ginsengisoli DCY57T (97.0 %) and Hymenobacter marinus KJ035T (96.5 %) and less than 96.2 % with other members of the genus. Cells of TAPP3T were Gram-stain-negative, aerobic, motile by gliding, rods that were surrounded by a thick capsule. Growth occurred at 20-35 °C (optimum, 25-30 °C), at pH 6.5-7.5 (optimum, pH 7) and with 0-1 % NaCl (optimum, 0 %). TAPP3T contained iso-C15 : 0, summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c) and C16 : 1ω5c as the predominant fatty acids. The major isoprenoid quinone was MK-7. The polar lipid profile consisted of phosphatidylethanolamine, six uncharacterized aminophospholipids and four uncharacterized lipids. The major polyamine was homospermidine. The DNA G+C content of the genomic DNA was 62.8 mol%. The DNA-DNA relatedness of TAPP3T with respect to Hymenobacter ginsengisoli DCY57T was less than 40 %. On the basis of the phylogenetic inference and phenotypic data, TAPP3T should be classified as representing a novel species, for which the name Hymenobacter rivuli sp. nov. is proposed. The type strain is TAPP3T (=BCRC 80979T=LMG 29559T=KCTC 52236T).

Keywords: Bacteroidetes; Cytophagaceae; Cytophagales; Cytophagia; freshwater creek.

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Cytophagaceae / classification*
  • Cytophagaceae / genetics
  • Cytophagaceae / isolation & purification
  • DNA, Bacterial / genetics
  • Fatty Acids / chemistry
  • Fresh Water / microbiology*
  • Phospholipids / chemistry
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Spermidine / chemistry
  • Taiwan
  • Vitamin K 2 / analogs & derivatives
  • Vitamin K 2 / chemistry
  • Water Microbiology*

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Phospholipids
  • RNA, Ribosomal, 16S
  • Vitamin K 2
  • menaquinone 7
  • Spermidine