On the distinct binding modes of expansin and carbohydrate-binding module proteins on crystalline and nanofibrous cellulose: implications for cellulose degradation by designer cellulosomes

Phys Chem Chem Phys. 2018 Mar 28;20(12):8278-8293. doi: 10.1039/c7cp07764e. Epub 2018 Mar 12.

Abstract

Transformation of cellulose into monosaccharides can be achieved by hydrolysis of the cellulose chains, carried out by a special group of enzymes known as cellulases. The enzymatic mechanism of cellulases is well described, but the role of non-enzymatic components of the cellulose-degradation machinery is still poorly understood, and difficult to measure using experiments alone. In this study, we use a comprehensive set of atomistic molecular dynamics simulations to probe the molecular details of binding of the family-3a carbohydrate-binding module (CBM3a) and the bacterial expansin protein (EXLX1) to a range of cellulose substrates. Our results suggest that CBM3a behaves in a similar way on both crystalline and amorphous cellulose, whereas binding of the dual-domain expansin protein depends on the substrate crystallinity, and we relate our computed binding modes to the experimentally measured features of CBM and expansin action on cellulose.

MeSH terms

  • Bacillus subtilis / chemistry
  • Bacterial Proteins / chemistry*
  • Binding Sites
  • Cellulose / chemistry*
  • Cellulosomes / chemistry*
  • Clostridium thermocellum / chemistry
  • Crystallization
  • Models, Molecular
  • Molecular Conformation
  • Molecular Dynamics Simulation*
  • Monosaccharides / chemistry
  • Nanofibers
  • Protein Binding

Substances

  • Bacterial Proteins
  • Monosaccharides
  • Cellulose