Inhibitory kinetics and mechanism of rifampicin on α-glucosidase: Insights from spectroscopic and molecular docking analyses

Int J Biol Macromol. 2019 Feb 1:122:1244-1252. doi: 10.1016/j.ijbiomac.2018.09.077. Epub 2018 Sep 15.

Abstract

α-Glucosidase is a critical enzyme associated with diabetes mellitus, and the inhibitors of the enzyme play important roles in the treatment of the disease. In this study, the inhibitory effect and mechanism of rifampicin on α-glucosidase were investigated by multispectroscopic methods along with molecular docking technique. The results showed that rifampicin inhibited α-glucosidase activity prominently (IC50 = 135 ± 1.2 μM) in a reversible and competitive-type manner. The fluorescence intensity of α-glucosidase was quenched by rifampicin through forming rifampicin-α-glucosidase complex in a static procedure. And the formation of the rifampicin-α-glucosidase complex was driven spontaneously by hydrophobic forces and hydrogen bonds. The results obtained from molecular docking further indicated that hydrophobic forces were formed between rifampicin and amino acid residues Phe 173, Pro151, and hydrogen bonds were generated by the interactions of rifampicin with residues Ser 180, Asn 414, Gly160, and Gly161 of α-glucosidase. Moreover, it was found that the binding of rifampicin to α-glucosidase could alter the conformation of the enzyme to make it steady, and the binding distance was estimated to be 1.02 nm. Therefore, this study confirmed a novel α-glucosidase inhibitor and possibly contributed to the improvement of newfangled anti-diabetic agent.

Keywords: Inhibition mechanism; Rifampicin; α-Glucosidase.

MeSH terms

  • Binding Sites
  • Energy Transfer
  • Glycoside Hydrolase Inhibitors / metabolism*
  • Glycoside Hydrolase Inhibitors / pharmacology*
  • Kinetics
  • Molecular Docking Simulation*
  • Protein Conformation
  • Rifampin / metabolism*
  • Rifampin / pharmacology*
  • Spectrum Analysis
  • Thermodynamics
  • alpha-Glucosidases / chemistry
  • alpha-Glucosidases / metabolism*

Substances

  • Glycoside Hydrolase Inhibitors
  • alpha-Glucosidases
  • Rifampin