Human chromatin remodeler cofactor, RNA interactor, eraser and writer sperm RNAs responding to obesity

Epigenetics. 2020 Jan-Feb;15(1-2):32-46. doi: 10.1080/15592294.2019.1644880. Epub 2019 Jul 29.

Abstract

In the United States almost 33% of adults are considered obese (BMI > 30 kg/m2). Both animal models and to a lesser extent human studies, have associated BMI, a measure of obesity, with alterations in sperm DNA methylation and RNAs. Sperm RNAs from the Assessment of Multiple Gestations from Ovarian Stimulation trial, were isolated and sequenced. A Generalized Linear Model identified 487 BMI associated human sperm RNA elements (short exon-sized sequences). They partitioned into four patterns; a continual increase with BMI, increase once obese (BMI>30 kg/m2); a steady decrease with BMI; and decrease once overweight (BMI 25 - 30 kg/m2). Gene Ontology revealed a unique relationship between BMI and transcripts associated with chromosome organization, adipogenesis, cellular stress and obesity-related inflammation. Coregulatory networks linked by Chromatin remodeler cofactors, RNA interactors, Erasers and Writers (CREWs) were uncovered to reveal a hierarchical epigenetic response pathway.

Keywords: BMI; CREWs - chromatin remodeler cofactor RNA interactor eraser and writer RNAs; obesity; sperm RNA.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Body Mass Index
  • Chromatin Assembly and Disassembly
  • DNA Methylation
  • Gene Regulatory Networks
  • Humans
  • Male
  • Obesity / genetics*
  • Obesity / metabolism
  • RNA Processing, Post-Transcriptional
  • Spermatozoa / metabolism*
  • Transcriptome*