Identification of 2,6-Disubstituted 3 H-Imidazo[4,5- b]pyridines as Therapeutic Agents for Dysferlinopathies through Phenotypic Screening on Patient-Derived Induced Pluripotent Stem Cells

J Med Chem. 2019 Oct 24;62(20):9175-9187. doi: 10.1021/acs.jmedchem.9b01100. Epub 2019 Oct 7.

Abstract

Dysferlinopathies, which are muscular diseases caused by mutations in the dysferlin gene, remain serious medical problems due to the lack of therapeutic agents. Herein, we report the design, synthesis, and structure-activity relationships of a 2,6-disubstituted 3H-imidazo[4,5-b]pyridine series, which was identified from the phenotypic screening of chemicals that increase the level of dysferlin in myocytes differentiated from patient-derived induced pluripotent stem cells (iPSCs). Optimization studies with cell-based phenotypic assay led to the identification of a highly potent compound, 19, with dysferlin elevation effects at double-digit nanomolar concentrations. In addition, the molecular target of our chemical series was identified as tubulin, through a tubulin polymerization assay and a competitive binding assay using a photoaffinity labeling probe.

MeSH terms

  • Binding Sites
  • Cell Differentiation
  • Cell Proliferation / drug effects
  • Drug Design
  • Dysferlin / metabolism
  • Hep G2 Cells
  • Humans
  • Imidazoles / chemistry*
  • Imidazoles / pharmacology
  • Imidazoles / therapeutic use
  • Induced Pluripotent Stem Cells / cytology
  • Induced Pluripotent Stem Cells / metabolism
  • Molecular Docking Simulation
  • Muscular Dystrophies, Limb-Girdle / drug therapy*
  • Muscular Dystrophies, Limb-Girdle / pathology
  • MyoD Protein / metabolism
  • Myocytes, Cardiac / cytology
  • Myocytes, Cardiac / metabolism
  • Protein Structure, Tertiary
  • Pyridines / chemistry*
  • Pyridines / pharmacology
  • Pyridines / therapeutic use
  • Structure-Activity Relationship
  • Tubulin / chemistry
  • Tubulin / metabolism
  • Tubulin Modulators / chemistry
  • Tubulin Modulators / pharmacology
  • Tubulin Modulators / therapeutic use*

Substances

  • Dysferlin
  • Imidazoles
  • MyoD Protein
  • Pyridines
  • Tubulin
  • Tubulin Modulators
  • imidazo(4,5-b)pyridine

Supplementary concepts

  • Dysferlinopathy